c2pfam

AT1G50250.1 :

Domain Description Evalue Bits GA Start End
PsbW Photosystem II reaction centre W protein (PsbW) 0.00053 10 25.10 45 91
FtsH_ext FtsH Extracellular 3.4E-05 15 25.50 135 176
FtsH_ext FtsH Extracellular 0.66 1 25.50 210 245
AAA_16 AAA ATPase domain 4.1E-06 18 32.60 294 320
IstB_IS21 IstB-like ATP binding protein 2.3E-05 14 24.10 296 319
TIP49 TIP49 C-terminus 3.7E-06 17 23.80 296 331
AAA_7 P-loop containing dynein motor region 0.00062 10 25.80 296 315
AAA_22 AAA domain 4.2E-05 14 27.00 298 319
RuvB_N Holliday junction DNA helicase ruvB N-terminus 1.7E-05 15 20.00 298 328
AAA_14 AAA domain 0.00038 11 27.00 298 387
Mg_chelatase Magnesium chelatase, subunit ChlI 9.1E-05 12 20.30 298 316
AAA_5 AAA domain (dynein-related subfamily) 1.8E-06 18 20.80 298 412
AAA ATPase family associated with various cellular activities (AAA) 0 150 20.80 299 430
AAA_2 AAA domain (Cdc48 subfamily) 1.1E-05 16 20.60 299 388
AAA_33 AAA domain 7.9E-05 13 27.00 299 320
AAA_28 AAA domain 8.8E-05 13 27.00 300 333
AAA_17 AAA domain 0.00029 12 27.00 301 351
AAA_16 AAA ATPase domain 0.44 1 32.60 343 365
AAA_lid_3 AAA+ lid domain 2.3E-18 56 27.20 453 496
Peptidase_M41 Peptidase family M41 0 245 20.60 512 705

716

PsbW
FtsH_ext
FtsH_ext
AAA_16
IstB_IS21
TIP49
AAA_7
AAA_22
RuvB_N
AAA_14
Mg_chelatase
AAA_5
AAA
AAA_2
AAA_33
AAA_28
AAA_17
AAA_16
AAA_lid_3
Peptidase_M41

References:

IstB_IS21

AAA_16

AAA_14

AAA_17

AAA_lid_3

FtsH_ext
12667449 Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH. Mol Cell 2003;11:659-669.
12732516 The ftsH gene of the wine bacterium Oenococcus oeni is involved in protection against environmental stress. Appl Environ Microbiol 2003;69:2512-2520.

PsbW
12856936 Molecular analysis of the Chlamydomonas nuclear gene encoding PsbW and demonstration that PsbW is a subunit of photosystem II, but not photosystem I. Plant Mol Biol 2003;52:285-289.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Peptidase_M41

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_33

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_28

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

Domain	Description	Evalue	Bits	GA	Start	End
PsbW	Photosystem II reaction centre W protein (PsbW)	0.00053	10	25.10	45	91
FtsH_ext	FtsH Extracellular	3.4E-05	15	25.50	135	176
FtsH_ext	FtsH Extracellular	0.66	1	25.50	210	245
AAA_16	AAA ATPase domain	4.1E-06	18	32.60	294	320
IstB_IS21	IstB-like ATP binding protein	2.3E-05	14	24.10	296	319
TIP49	TIP49 C-terminus	3.7E-06	17	23.80	296	331
AAA_7	P-loop containing dynein motor region	0.00062	10	25.80	296	315
AAA_22	AAA domain	4.2E-05	14	27.00	298	319
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	1.7E-05	15	20.00	298	328
AAA_14	AAA domain	0.00038	11	27.00	298	387
Mg_chelatase	Magnesium chelatase, subunit ChlI	9.1E-05	12	20.30	298	316
AAA_5	AAA domain (dynein-related subfamily)	1.8E-06	18	20.80	298	412
AAA	ATPase family associated with various cellular activities (AAA)	0	150	20.80	299	430
AAA_2	AAA domain (Cdc48 subfamily)	1.1E-05	16	20.60	299	388
AAA_33	AAA domain	7.9E-05	13	27.00	299	320
AAA_28	AAA domain	8.8E-05	13	27.00	300	333
AAA_17	AAA domain	0.00029	12	27.00	301	351
AAA_16	AAA ATPase domain	0.44	1	32.60	343	365
AAA_lid_3	AAA+ lid domain	2.3E-18	56	27.20	453	496
Peptidase_M41	Peptidase family M41	0	245	20.60	512	705