c2pfam

AT1G50500.1 :

Domain Description Evalue Bits GA Start End
Vps53_N Vps53-like, N-terminal 0 542 24.00 2 424
Vps54_N Vacuolar-sorting protein 54, of GARP complex 8.2E-08 22 27.00 3 181
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 0.00018 11 30.00 22 97
COG2 COG (conserved oligomeric Golgi) complex component, COG2 0.00062 10 24.70 24 125
COG5 Golgi transport complex subunit 5 0.00026 11 29.00 27 124
DUF2884 Protein of unknown function (DUF2884) 1.1E-05 15 30.00 30 116
DUF1664 Protein of unknown function (DUF1664) 0.00082 9 30.00 53 114
XhlA Haemolysin XhlA 8.5E-06 16 29.10 56 108
DUF573 Protein of unknown function, DUF573 0.31 2 29.50 58 84
RecG_N RecG N-terminal helical domain 0.0007 10 22.60 67 150
COG7 Golgi complex component 7 (COG7) 0.41 -1 27.30 68 143
NPV_P10 Nucleopolyhedrovirus P10 protein 0.0077 7 29.80 120 174
DUF573 Protein of unknown function, DUF573 0.17 3 29.50 122 174
DUF1664 Protein of unknown function (DUF1664) 0.41 1 30.00 130 175
XhlA Haemolysin XhlA 0.43 1 29.10 158 174
DUF573 Protein of unknown function, DUF573 0.017 6 29.50 341 373
RINT1_TIP1 RINT-1 / TIP-1 family 5.4E-07 19 23.80 391 680
COG7 Golgi complex component 7 (COG7) 2.7E-07 19 27.30 394 479
VPS53_C Vacuolar protein sorting-associated protein 53 C-terminus 2.8E-06 17 27.00 650 729

828

Vps53_N
Vps54_N
MCPsignal
COG2
COG5
DUF2884
DUF1664
XhlA
DUF573
RecG_N
COG7
NPV_P10
DUF573
DUF1664
XhlA
DUF573
RINT1_TIP1
COG7
VPS53_C

References:

NPV_P10
9634101 The single-nucleocapsid nucleopolyhedrovirus of Buzura suppressaria encodes a P10 protein. J Gen Virol 1998;79:1553-1562.

DUF1664

MCPsignal
1601874 Sequence and characterization of Bacillus subtilis CheW. J Biol Chem 1992;267:12055-12060.

DUF573

RecG_N

COG7
15107842 Mutation of the COG complex subunit gene COG7 causes a lethal congenital disorder. Nat Med. 2004;10:518-523.

XhlA
15659065 Expression and activity of a Xenorhabdus nematophila haemolysin required for full virulence towards Manduca sexta insects. Cell Microbiol. 2005;7:209-219.

RINT1_TIP1
11096100 RINT-1, a novel Rad50-interacting protein, participates in radiation-induced G(2)/M checkpoint control. J Biol Chem 2001;276:6105-6111.
8334998 The TIP1 gene of Saccharomyces cerevisiae encodes an 80 kDa cytoplasmic protein that interacts with the cytoplasmic domain of Sec20p. EMBO J 1993;12:2831-2840.

Vps54_N

VPS53_C

Vps53_N
1063730 A new translocation in chronic myelogenous leukemia. Hum Genet 1976;32:229-232.

COG5
15932880 Cog1p plays a central role in the organization of the yeast conserved oligomeric Golgi complex. J Biol Chem. 2005;280:27613-27623.

COG2
11980916 Characterization of a mammalian Golgi-localized protein complex, COG, that is required for normal Golgi morphology and function. J Cell Biol 2002;157:405-415.
17565980 Structural analysis of conserved oligomeric Golgi complex subunit 2. J Biol Chem. 2007;282:23418-23426.

DUF2884

Domain	Description	Evalue	Bits	GA	Start	End
Vps53_N	Vps53-like, N-terminal	0	542	24.00	2	424
Vps54_N	Vacuolar-sorting protein 54, of GARP complex	8.2E-08	22	27.00	3	181
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	0.00018	11	30.00	22	97
COG2	COG (conserved oligomeric Golgi) complex component, COG2	0.00062	10	24.70	24	125
COG5	Golgi transport complex subunit 5	0.00026	11	29.00	27	124
DUF2884	Protein of unknown function (DUF2884)	1.1E-05	15	30.00	30	116
DUF1664	Protein of unknown function (DUF1664)	0.00082	9	30.00	53	114
XhlA	Haemolysin XhlA	8.5E-06	16	29.10	56	108
DUF573	Protein of unknown function, DUF573	0.31	2	29.50	58	84
RecG_N	RecG N-terminal helical domain	0.0007	10	22.60	67	150
COG7	Golgi complex component 7 (COG7)	0.41	-1	27.30	68	143
NPV_P10	Nucleopolyhedrovirus P10 protein	0.0077	7	29.80	120	174
DUF573	Protein of unknown function, DUF573	0.17	3	29.50	122	174
DUF1664	Protein of unknown function (DUF1664)	0.41	1	30.00	130	175
XhlA	Haemolysin XhlA	0.43	1	29.10	158	174
DUF573	Protein of unknown function, DUF573	0.017	6	29.50	341	373
RINT1_TIP1	RINT-1 / TIP-1 family	5.4E-07	19	23.80	391	680
COG7	Golgi complex component 7 (COG7)	2.7E-07	19	27.30	394	479
VPS53_C	Vacuolar protein sorting-associated protein 53 C-terminus	2.8E-06	17	27.00	650	729