c2pfam

AT1G51380.1 :

Domain Description Evalue Bits GA Start End
DEAD DEAD/DEAH box helicase 0 143 20.60 47 209
AAA_30 AAA domain 4.9E-08 22 27.00 48 181
AAA_19 AAA domain 7.9E-07 19 25.10 49 175
DUF3638 Protein of unknown function (DUF3638) 0.0007 8 25.00 58 111
ResIII Type III restriction enzyme, res subunit 9.5E-08 22 20.90 59 118
CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 9.9E-05 12 21.70 62 147
Helicase_RecD Helicase 4E-06 16 22.70 65 173
AAA_34 P-loop containing NTP hydrolase pore-1 6.2E-05 11 27.00 68 124
CMS1 U3-containing 90S pre-ribosomal complex subunit 3.6E-05 13 35.00 141 173
DUF3638 Protein of unknown function (DUF3638) 0.018 4 25.00 167 180
Helicase_C Helicase conserved C-terminal domain 0.18 2 20.90 190 228
Helicase_C Helicase conserved C-terminal domain 3.9E-34 107 20.90 248 356
AAA_19 AAA domain 0.7 0 25.10 259 293

392

DEAD
AAA_30
AAA_19
DUF3638
ResIII
CbiA
Helicase_RecD
AAA_34
CMS1
DUF3638
Helicase_C
Helicase_C
AAA_19

References:

CMS1

AAA_34

DUF3638

ResIII

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

Helicase_C

Helicase_RecD

CbiA
9742225 Cobalamin (vitamin B12) biosynthesis: identification and characterization of a Bacillus megaterium cobI operon. Biochem J 1998;335:159-166.
9742226 Cobalamin (vitamin B12) biosynthesis: functional characterization of the Bacillus megaterium cbi genes required to convert uroporphyrinogen III into cobyrinic acid a,c-diamide. Biochem J 1998;335:167-173.
7635831 Identification and sequence analysis of genes involved in late steps in cobalamin (vitamin B12) synthesis in Rhodobacter capsulatus. J Bacteriol 1995;177:4481-4487.
8501034 Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. J Bacteriol 1993;175:3303-3316.
10966576 The synthetase domains of cobalamin biosynthesis amidotransferases cobB and cobQ belong to a new family of ATP-dependent amidoligases, related to dethiobiotin synthetase. Proteins 2000;41:238-247.
2149583 A family of ATPases involved in active partitioning of diverse bacterial plasmids. Mol Microbiol 1990;4:1455-1463.

AAA_19

AAA_30

Domain	Description	Evalue	Bits	GA	Start	End
DEAD	DEAD/DEAH box helicase	0	143	20.60	47	209
AAA_30	AAA domain	4.9E-08	22	27.00	48	181
AAA_19	AAA domain	7.9E-07	19	25.10	49	175
DUF3638	Protein of unknown function (DUF3638)	0.0007	8	25.00	58	111
ResIII	Type III restriction enzyme, res subunit	9.5E-08	22	20.90	59	118
CbiA	CobQ/CobB/MinD/ParA nucleotide binding domain	9.9E-05	12	21.70	62	147
Helicase_RecD	Helicase	4E-06	16	22.70	65	173
AAA_34	P-loop containing NTP hydrolase pore-1	6.2E-05	11	27.00	68	124
CMS1	U3-containing 90S pre-ribosomal complex subunit	3.6E-05	13	35.00	141	173
DUF3638	Protein of unknown function (DUF3638)	0.018	4	25.00	167	180
Helicase_C	Helicase conserved C-terminal domain	0.18	2	20.90	190	228
Helicase_C	Helicase conserved C-terminal domain	3.9E-34	107	20.90	248	356
AAA_19	AAA domain	0.7	0	25.10	259	293