c2pfam

AT1G51460.1 :

Domain Description Evalue Bits GA Start End
ABC_tran ABC transporter 3.1E-25 80 23.10 32 182
ABC_ATPase Predicted ATPase of the ABC class 8.7E-05 12 19.30 34 62
AAA_16 AAA ATPase domain 2.2E-07 22 32.60 38 84
AAA_30 AAA domain 0.00038 11 27.00 38 63
ATPase_2 ATPase domain predominantly from Archaea 0.00023 12 33.20 39 64
AAA_25 AAA domain 0.00044 11 27.00 40 69
Rad17 Rad17 cell cycle checkpoint protein 5.1E-05 14 19.70 40 66
RsgA_GTPase RsgA GTPase 7.3E-06 17 30.00 41 68
AAA_22 AAA domain 1.9E-05 16 27.00 41 65
NACHT NACHT domain 0.0001 13 20.40 42 70
SMC_N RecF/RecN/SMC N terminal domain 9E-05 13 40.00 42 62
AAA_29 P-loop containing region of AAA domain 1.3E-08 25 27.00 43 63
AAA_23 AAA domain 4.8E-06 18 27.00 43 63
IstB_IS21 IstB-like ATP binding protein 0.031 5 24.10 44 63
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 4.8E-06 17 27.00 44 109
AAA_28 AAA domain 0.00019 12 27.00 45 67
MMR_HSR1 GTPase of unknown function 0.00023 12 24.50 45 66
AAA_33 AAA domain 2.2E-05 15 27.00 45 73
Cytidylate_kin Cytidylate kinase 2.1E-05 15 20.40 45 75
AAA_18 AAA domain 2.4E-05 16 29.40 45 76
NTPase_1 NTPase 0.0029 8 23.90 45 75
RNA_helicase RNA helicase 0.00036 12 21.50 46 71
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 8E-05 13 27.00 147 205
SMC_N RecF/RecN/SMC N terminal domain 0.00071 10 40.00 154 213
IstB_IS21 IstB-like ATP binding protein 0.039 4 24.10 160 209
NTPase_1 NTPase 0.83 0 23.90 193 218
ABC2_membrane_7 ABC-2 type transporter 6.7E-14 42 22.70 211 284
ABC2_membrane ABC-2 type transporter 3.2E-34 109 25.50 356 566
Rab5ip Rab5-interacting protein (Rab5ip) 0.082 4 21.40 379 420
Rab5ip Rab5-interacting protein (Rab5ip) 0.0058 8 21.40 440 480

678

ABC_tran
ABC_ATPase
AAA_16
AAA_30
ATPase_2
AAA_25
Rad17
RsgA_GTPase
AAA_22
NACHT
SMC_N
AAA_29
AAA_23
IstB_IS21
AAA_21
AAA_28
MMR_HSR1
AAA_33
Cytidylate_kin
AAA_18
NTPase_1
RNA_helicase
AAA_21
SMC_N
IstB_IS21
NTPase_1
ABC2_membrane_7
ABC2_membrane
Rab5ip
Rab5ip

References:

IstB_IS21

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_33

RsgA_GTPase

ABC_ATPase

ABC2_membrane
1303751 A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci 1992;1:1326-1332.

Cytidylate_kin
9862805 Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure 1998;6:1517-1527.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_29

ABC2_membrane_7

NTPase_1

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Rab5ip
10818110 A novel membrane-anchored Rab5 interacting protein required for homotypic endosome fusion. J Biol Chem 2000;275:24661-24669.

ATPase_2

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

AAA_28

AAA_25

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

AAA_22

AAA_21

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
ABC_tran	ABC transporter	3.1E-25	80	23.10	32	182
ABC_ATPase	Predicted ATPase of the ABC class	8.7E-05	12	19.30	34	62
AAA_16	AAA ATPase domain	2.2E-07	22	32.60	38	84
AAA_30	AAA domain	0.00038	11	27.00	38	63
ATPase_2	ATPase domain predominantly from Archaea	0.00023	12	33.20	39	64
AAA_25	AAA domain	0.00044	11	27.00	40	69
Rad17	Rad17 cell cycle checkpoint protein	5.1E-05	14	19.70	40	66
RsgA_GTPase	RsgA GTPase	7.3E-06	17	30.00	41	68
AAA_22	AAA domain	1.9E-05	16	27.00	41	65
NACHT	NACHT domain	0.0001	13	20.40	42	70
SMC_N	RecF/RecN/SMC N terminal domain	9E-05	13	40.00	42	62
AAA_29	P-loop containing region of AAA domain	1.3E-08	25	27.00	43	63
AAA_23	AAA domain	4.8E-06	18	27.00	43	63
IstB_IS21	IstB-like ATP binding protein	0.031	5	24.10	44	63
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	4.8E-06	17	27.00	44	109
AAA_28	AAA domain	0.00019	12	27.00	45	67
MMR_HSR1	GTPase of unknown function	0.00023	12	24.50	45	66
AAA_33	AAA domain	2.2E-05	15	27.00	45	73
Cytidylate_kin	Cytidylate kinase	2.1E-05	15	20.40	45	75
AAA_18	AAA domain	2.4E-05	16	29.40	45	76
NTPase_1	NTPase	0.0029	8	23.90	45	75
RNA_helicase	RNA helicase	0.00036	12	21.50	46	71
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	8E-05	13	27.00	147	205
SMC_N	RecF/RecN/SMC N terminal domain	0.00071	10	40.00	154	213
IstB_IS21	IstB-like ATP binding protein	0.039	4	24.10	160	209
NTPase_1	NTPase	0.83	0	23.90	193	218
ABC2_membrane_7	ABC-2 type transporter	6.7E-14	42	22.70	211	284
ABC2_membrane	ABC-2 type transporter	3.2E-34	109	25.50	356	566
Rab5ip	Rab5-interacting protein (Rab5ip)	0.082	4	21.40	379	420
Rab5ip	Rab5-interacting protein (Rab5ip)	0.0058	8	21.40	440	480