c2pfam

AT1G51965.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 8E-08 22 27.00 134 246
PPR_2 PPR repeat family 0.00029 11 30.00 135 178
PPR PPR repeat 0.83 1 25.00 151 166
Mtf2 Mtf2 family 0.023 5 27.00 153 177
PPR_3 Pentatricopeptide repeat domain 0.0073 7 25.00 154 183
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.89 -1 21.90 157 186
PPR PPR repeat 0.14 3 25.00 173 196
PPR_3 Pentatricopeptide repeat domain 5.6E-05 14 25.00 194 230
PPR_1 PPR repeat 0.01 6 23.80 198 228
PPR_2 PPR repeat family 1.6E-12 38 30.00 202 249
MRP-S27 Mitochondrial 28S ribosomal protein S27 2.5E-05 14 25.90 203 266
PPR PPR repeat 1.2E-06 19 25.00 204 233
TPR_14 Tetratricopeptide repeat 0.02 6 23.50 206 226
PPR_long Pentacotripeptide-repeat region of PRORP 1.9E-17 54 27.00 210 361
TPR_2 Tetratricopeptide repeat 0.57 1 22.40 211 226
TPR_12 Tetratricopeptide repeat 0.37 2 30.10 218 257
PPR_3 Pentatricopeptide repeat domain 4.7E-10 30 25.00 228 284
PPR_1 PPR repeat 3.7E-09 27 23.80 233 265
PPR_2 PPR repeat family 5.1E-19 59 30.00 237 283
Mtf2 Mtf2 family 0.073 3 27.00 237 279
DUF4003 Protein of unknown function (DUF4003) 0.0063 6 27.00 238 268
BTAD Bacterial transcriptional activator domain 0.21 2 21.00 238 271
TPR_8 Tetratricopeptide repeat 0.13 3 25.70 240 262
TPR_14 Tetratricopeptide repeat 0.6 2 23.50 240 264
PPR PPR repeat 4.5E-08 23 25.00 240 269
PPR_1 PPR repeat 1.5E-09 28 23.80 268 299
PPR PPR repeat 1.3E-09 28 25.00 274 304
PPR_2 PPR repeat family 0.0016 9 30.00 283 307
TPR_19 Tetratricopeptide repeat 0.66 1 25.00 290 335
PPR_3 Pentatricopeptide repeat domain 1.9E-14 44 25.00 295 354
PPR_1 PPR repeat 2.7E-08 24 23.80 303 335
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.13 2 21.90 303 328
PPR_2 PPR repeat family 2.8E-17 53 30.00 307 353
PPR PPR repeat 2.4E-08 24 25.00 311 339
TPR_14 Tetratricopeptide repeat 0.078 5 23.50 313 338
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0087 5 25.90 320 360
DUF4003 Protein of unknown function (DUF4003) 0.11 2 27.00 322 353
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.34 0 21.90 327 353
PPR_1 PPR repeat 0.0013 9 23.80 338 351
PPR PPR repeat 0.72 1 25.00 344 359
PPR_long Pentacotripeptide-repeat region of PRORP 0.011 5 27.00 376 445
PPR PPR repeat 0.00011 13 25.00 377 403
PPR_2 PPR repeat family 0.0015 9 30.00 378 401
PPR_1 PPR repeat 0.005 7 23.80 378 401
TPR_14 Tetratricopeptide repeat 1 1 23.50 378 398
PPR_2 PPR repeat family 0.0023 9 30.00 412 444
PPR PPR repeat 3.5E-06 18 25.00 412 441
PPR_1 PPR repeat 0.0037 7 23.80 413 435
PPR_long Pentacotripeptide-repeat region of PRORP 1.3E-06 18 27.00 428 534
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.021 4 21.90 428 493
PPR_3 Pentatricopeptide repeat domain 1.1E-10 32 25.00 433 491
PPR_1 PPR repeat 0.44 1 23.80 439 456
PPR_2 PPR repeat family 5.9E-14 42 30.00 444 490
PPR PPR repeat 7.5E-07 20 25.00 447 475
Mtf2 Mtf2 family 0.08 3 27.00 457 487
PPR_1 PPR repeat 2.1E-12 37 23.80 475 506
PPR_2 PPR repeat family 1.3E-15 48 30.00 478 525
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.02 4 25.90 478 508
PPR PPR repeat 1.5E-09 28 25.00 481 511
PYRIN PAAD/DAPIN/Pyrin domain 0.21 2 22.90 484 510
TPR_14 Tetratricopeptide repeat 0.44 2 23.50 492 506
TPR_19 Tetratricopeptide repeat 0.0071 7 25.00 494 547
TPR_6 Tetratricopeptide repeat 0.85 1 26.30 494 506
PPR_3 Pentatricopeptide repeat domain 2.6E-15 47 25.00 502 562
PPR_1 PPR repeat 9.2E-13 38 23.80 510 541
PPR_2 PPR repeat family 1.4E-18 57 30.00 513 560
TPR_12 Tetratricopeptide repeat 0.41 1 30.10 513 534
PPR PPR repeat 1.4E-11 34 25.00 516 546
TPR_1 Tetratricopeptide repeat 0.034 5 20.40 517 534
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.0096 5 21.90 527 564
TPR_19 Tetratricopeptide repeat 0.055 4 25.00 527 552
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00064 9 25.90 531 617
PPR_long Pentacotripeptide-repeat region of PRORP 7E-11 32 27.00 531 629
PPR_1 PPR repeat 2E-11 34 23.80 544 576
PPR_2 PPR repeat family 1.8E-19 60 30.00 548 595
PPR PPR repeat 4.3E-10 30 25.00 551 581
PYRIN PAAD/DAPIN/Pyrin domain 0.028 5 22.90 552 576
Mtf2 Mtf2 family 0.0068 6 27.00 570 600
PPR_3 Pentatricopeptide repeat domain 1.7E-11 34 25.00 571 626
PPR_1 PPR repeat 2.5E-12 37 23.80 579 612
PPR_2 PPR repeat family 1.5E-17 54 30.00 583 626
PPR PPR repeat 7.6E-10 29 25.00 586 616
TPR_12 Tetratricopeptide repeat 0.034 5 30.10 586 608
TPR_8 Tetratricopeptide repeat 0.1 4 25.70 588 610
BTAD Bacterial transcriptional activator domain 0.032 5 21.00 588 613
TPR_19 Tetratricopeptide repeat 0.13 3 25.00 591 609
TPR_14 Tetratricopeptide repeat 0.081 4 23.50 591 614
TPR_6 Tetratricopeptide repeat 0.18 3 26.30 594 610
TPR_1 Tetratricopeptide repeat 0.069 4 20.40 594 610
TPR_2 Tetratricopeptide repeat 0.084 4 22.40 594 610
DUF4003 Protein of unknown function (DUF4003) 0.089 2 27.00 597 623
PPR_1 PPR repeat 0.012 6 23.80 615 626

653

PPR_long
PPR_2
PPR
Mtf2
PPR_3
ECSIT
PPR
PPR_3
PPR_1
PPR_2
MRP-S27
PPR
TPR_14
PPR_long
TPR_2
TPR_12
PPR_3
PPR_1
PPR_2
Mtf2
DUF4003
BTAD
TPR_8
TPR_14
PPR
PPR_1
PPR
PPR_2
TPR_19
PPR_3
PPR_1
ECSIT
PPR_2
PPR
TPR_14
MRP-S27
DUF4003
ECSIT
PPR_1
PPR
PPR_long
PPR
PPR_2
PPR_1
TPR_14
PPR_2
PPR
PPR_1
PPR_long
ECSIT
PPR_3
PPR_1
PPR_2
PPR
Mtf2
PPR_1
PPR_2
MRP-S27
PPR
PYRIN
TPR_14
TPR_19
TPR_6
PPR_3
PPR_1
PPR_2
TPR_12
PPR
TPR_1
ECSIT
TPR_19
MRP-S27
PPR_long
PPR_1
PPR_2
PPR
PYRIN
Mtf2
PPR_3
PPR_1
PPR_2
PPR
TPR_12
TPR_8
BTAD
TPR_19
TPR_14
TPR_6
TPR_1
TPR_2
DUF4003
PPR_1

References:

TPR_6

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

TPR_12

PYRIN

Mtf2

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

DUF4003

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	8E-08	22	27.00	134	246
PPR_2	PPR repeat family	0.00029	11	30.00	135	178
PPR	PPR repeat	0.83	1	25.00	151	166
Mtf2	Mtf2 family	0.023	5	27.00	153	177
PPR_3	Pentatricopeptide repeat domain	0.0073	7	25.00	154	183
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.89	-1	21.90	157	186
PPR	PPR repeat	0.14	3	25.00	173	196
PPR_3	Pentatricopeptide repeat domain	5.6E-05	14	25.00	194	230
PPR_1	PPR repeat	0.01	6	23.80	198	228
PPR_2	PPR repeat family	1.6E-12	38	30.00	202	249
MRP-S27	Mitochondrial 28S ribosomal protein S27	2.5E-05	14	25.90	203	266
PPR	PPR repeat	1.2E-06	19	25.00	204	233
TPR_14	Tetratricopeptide repeat	0.02	6	23.50	206	226
PPR_long	Pentacotripeptide-repeat region of PRORP	1.9E-17	54	27.00	210	361
TPR_2	Tetratricopeptide repeat	0.57	1	22.40	211	226
TPR_12	Tetratricopeptide repeat	0.37	2	30.10	218	257
PPR_3	Pentatricopeptide repeat domain	4.7E-10	30	25.00	228	284
PPR_1	PPR repeat	3.7E-09	27	23.80	233	265
PPR_2	PPR repeat family	5.1E-19	59	30.00	237	283
Mtf2	Mtf2 family	0.073	3	27.00	237	279
DUF4003	Protein of unknown function (DUF4003)	0.0063	6	27.00	238	268
BTAD	Bacterial transcriptional activator domain	0.21	2	21.00	238	271
TPR_8	Tetratricopeptide repeat	0.13	3	25.70	240	262
TPR_14	Tetratricopeptide repeat	0.6	2	23.50	240	264
PPR	PPR repeat	4.5E-08	23	25.00	240	269
PPR_1	PPR repeat	1.5E-09	28	23.80	268	299
PPR	PPR repeat	1.3E-09	28	25.00	274	304
PPR_2	PPR repeat family	0.0016	9	30.00	283	307
TPR_19	Tetratricopeptide repeat	0.66	1	25.00	290	335
PPR_3	Pentatricopeptide repeat domain	1.9E-14	44	25.00	295	354
PPR_1	PPR repeat	2.7E-08	24	23.80	303	335
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.13	2	21.90	303	328
PPR_2	PPR repeat family	2.8E-17	53	30.00	307	353
PPR	PPR repeat	2.4E-08	24	25.00	311	339
TPR_14	Tetratricopeptide repeat	0.078	5	23.50	313	338
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0087	5	25.90	320	360
DUF4003	Protein of unknown function (DUF4003)	0.11	2	27.00	322	353
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.34	0	21.90	327	353
PPR_1	PPR repeat	0.0013	9	23.80	338	351
PPR	PPR repeat	0.72	1	25.00	344	359
PPR_long	Pentacotripeptide-repeat region of PRORP	0.011	5	27.00	376	445
PPR	PPR repeat	0.00011	13	25.00	377	403
PPR_2	PPR repeat family	0.0015	9	30.00	378	401
PPR_1	PPR repeat	0.005	7	23.80	378	401
TPR_14	Tetratricopeptide repeat	1	1	23.50	378	398
PPR_2	PPR repeat family	0.0023	9	30.00	412	444
PPR	PPR repeat	3.5E-06	18	25.00	412	441
PPR_1	PPR repeat	0.0037	7	23.80	413	435
PPR_long	Pentacotripeptide-repeat region of PRORP	1.3E-06	18	27.00	428	534
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.021	4	21.90	428	493
PPR_3	Pentatricopeptide repeat domain	1.1E-10	32	25.00	433	491
PPR_1	PPR repeat	0.44	1	23.80	439	456
PPR_2	PPR repeat family	5.9E-14	42	30.00	444	490
PPR	PPR repeat	7.5E-07	20	25.00	447	475
Mtf2	Mtf2 family	0.08	3	27.00	457	487
PPR_1	PPR repeat	2.1E-12	37	23.80	475	506
PPR_2	PPR repeat family	1.3E-15	48	30.00	478	525
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.02	4	25.90	478	508
PPR	PPR repeat	1.5E-09	28	25.00	481	511
PYRIN	PAAD/DAPIN/Pyrin domain	0.21	2	22.90	484	510
TPR_14	Tetratricopeptide repeat	0.44	2	23.50	492	506
TPR_19	Tetratricopeptide repeat	0.0071	7	25.00	494	547
TPR_6	Tetratricopeptide repeat	0.85	1	26.30	494	506
PPR_3	Pentatricopeptide repeat domain	2.6E-15	47	25.00	502	562
PPR_1	PPR repeat	9.2E-13	38	23.80	510	541
PPR_2	PPR repeat family	1.4E-18	57	30.00	513	560
TPR_12	Tetratricopeptide repeat	0.41	1	30.10	513	534
PPR	PPR repeat	1.4E-11	34	25.00	516	546
TPR_1	Tetratricopeptide repeat	0.034	5	20.40	517	534
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.0096	5	21.90	527	564
TPR_19	Tetratricopeptide repeat	0.055	4	25.00	527	552
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00064	9	25.90	531	617
PPR_long	Pentacotripeptide-repeat region of PRORP	7E-11	32	27.00	531	629
PPR_1	PPR repeat	2E-11	34	23.80	544	576
PPR_2	PPR repeat family	1.8E-19	60	30.00	548	595
PPR	PPR repeat	4.3E-10	30	25.00	551	581
PYRIN	PAAD/DAPIN/Pyrin domain	0.028	5	22.90	552	576
Mtf2	Mtf2 family	0.0068	6	27.00	570	600
PPR_3	Pentatricopeptide repeat domain	1.7E-11	34	25.00	571	626
PPR_1	PPR repeat	2.5E-12	37	23.80	579	612
PPR_2	PPR repeat family	1.5E-17	54	30.00	583	626
PPR	PPR repeat	7.6E-10	29	25.00	586	616
TPR_12	Tetratricopeptide repeat	0.034	5	30.10	586	608
TPR_8	Tetratricopeptide repeat	0.1	4	25.70	588	610
BTAD	Bacterial transcriptional activator domain	0.032	5	21.00	588	613
TPR_19	Tetratricopeptide repeat	0.13	3	25.00	591	609
TPR_14	Tetratricopeptide repeat	0.081	4	23.50	591	614
TPR_6	Tetratricopeptide repeat	0.18	3	26.30	594	610
TPR_1	Tetratricopeptide repeat	0.069	4	20.40	594	610
TPR_2	Tetratricopeptide repeat	0.084	4	22.40	594	610
DUF4003	Protein of unknown function (DUF4003)	0.089	2	27.00	597	623
PPR_1	PPR repeat	0.012	6	23.80	615	626