c2pfam

AT1G53270.1 :

Domain Description Evalue Bits GA Start End
ABC_tran ABC transporter 5.6E-31 99 23.10 51 201
Rad17 Rad17 cell cycle checkpoint protein 3E-05 15 19.70 51 106
AAA_23 AAA domain 2.1E-06 19 27.00 53 81
RsgA_GTPase RsgA GTPase 5.8E-06 17 30.00 53 88
AAA_29 P-loop containing region of AAA domain 2.3E-05 15 27.00 57 78
AAA_22 AAA domain 5.8E-06 17 27.00 60 229
SMC_N RecF/RecN/SMC N terminal domain 0.00033 11 40.00 60 249
AAA_16 AAA ATPase domain 5.6E-05 14 32.60 60 88
AAA_30 AAA domain 0.00015 12 27.00 61 214
AAA_25 AAA domain 0.00023 11 27.00 62 89
cobW CobW/HypB/UreG, nucleotide-binding domain 0.00012 12 20.70 63 86
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 1E-05 16 27.00 63 96
NACHT NACHT domain 0.00012 13 20.40 64 93
AAA_28 AAA domain 0.00045 11 27.00 65 83
NTPase_1 NTPase 0.0027 8 23.90 65 91
AAA_13 AAA domain 0.17 1 36.00 66 83
AAA_18 AAA domain 9.7E-05 14 29.40 66 98
DUF2304 Uncharacterized conserved protein (DUF2304) 0.045 5 23.00 132 158
AAA_13 AAA domain 0.00062 9 36.00 190 229
NTPase_1 NTPase 0.31 1 23.90 191 243
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0034 8 27.00 192 233
ABC2_membrane_7 ABC-2 type transporter 1.2E-06 18 22.70 231 289
ABC2_membrane_7 ABC-2 type transporter 0.0024 7 22.70 323 459
ABC2_membrane ABC-2 type transporter 0 154 25.50 333 543
ABC2_membrane_3 ABC-2 family transporter protein 0.00039 10 31.60 387 578
DUF2304 Uncharacterized conserved protein (DUF2304) 0.027 5 23.00 434 480
PDR_CDR CDR ABC transporter 6.9E-05 13 20.50 544 579

590

ABC_tran
Rad17
AAA_23
RsgA_GTPase
AAA_29
AAA_22
SMC_N
AAA_16
AAA_30
AAA_25
cobW
AAA_21
NACHT
AAA_28
NTPase_1
AAA_13
AAA_18
DUF2304
AAA_13
NTPase_1
AAA_21
ABC2_membrane_7
ABC2_membrane_7
ABC2_membrane
ABC2_membrane_3
DUF2304
PDR_CDR

References:

AAA_16

PDR_CDR
12709320 Functional Similarities and Differences between Candida albicans Cdr1p and Cdr2p Transporters. Antimicrob Agents Chemother 2003;47:1543-1554.

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

ABC2_membrane_3

DUF2304

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

ABC2_membrane
1303751 A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci 1992;1:1326-1332.

AAA_29

ABC2_membrane_7

NTPase_1

AAA_13

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_28

AAA_25

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

AAA_22

AAA_21

RsgA_GTPase

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
ABC_tran	ABC transporter	5.6E-31	99	23.10	51	201
Rad17	Rad17 cell cycle checkpoint protein	3E-05	15	19.70	51	106
AAA_23	AAA domain	2.1E-06	19	27.00	53	81
RsgA_GTPase	RsgA GTPase	5.8E-06	17	30.00	53	88
AAA_29	P-loop containing region of AAA domain	2.3E-05	15	27.00	57	78
AAA_22	AAA domain	5.8E-06	17	27.00	60	229
SMC_N	RecF/RecN/SMC N terminal domain	0.00033	11	40.00	60	249
AAA_16	AAA ATPase domain	5.6E-05	14	32.60	60	88
AAA_30	AAA domain	0.00015	12	27.00	61	214
AAA_25	AAA domain	0.00023	11	27.00	62	89
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.00012	12	20.70	63	86
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	1E-05	16	27.00	63	96
NACHT	NACHT domain	0.00012	13	20.40	64	93
AAA_28	AAA domain	0.00045	11	27.00	65	83
NTPase_1	NTPase	0.0027	8	23.90	65	91
AAA_13	AAA domain	0.17	1	36.00	66	83
AAA_18	AAA domain	9.7E-05	14	29.40	66	98
DUF2304	Uncharacterized conserved protein (DUF2304)	0.045	5	23.00	132	158
AAA_13	AAA domain	0.00062	9	36.00	190	229
NTPase_1	NTPase	0.31	1	23.90	191	243
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0034	8	27.00	192	233
ABC2_membrane_7	ABC-2 type transporter	1.2E-06	18	22.70	231	289
ABC2_membrane_7	ABC-2 type transporter	0.0024	7	22.70	323	459
ABC2_membrane	ABC-2 type transporter	0	154	25.50	333	543
ABC2_membrane_3	ABC-2 family transporter protein	0.00039	10	31.60	387	578
DUF2304	Uncharacterized conserved protein (DUF2304)	0.027	5	23.00	434	480
PDR_CDR	CDR ABC transporter	6.9E-05	13	20.50	544	579