c2pfam

AT1G53390.1 :

Domain Description Evalue Bits GA Start End
DUF3435 Protein of unknown function (DUF3435) 0.68 -1 25.80 340 389
V-ATPase_G Vacuolar (H+)-ATPase G subunit 0.00036 11 22.90 348 395
DUF5392 Family of unknown function (DUF5392) 0.025 5 25.00 456 485
DUF1149 Protein of unknown function (DUF1149) 0.00028 11 25.00 456 508
DUF3435 Protein of unknown function (DUF3435) 0.0002 10 25.80 475 517
RsgA_GTPase RsgA GTPase 2.8E-06 17 30.00 516 557
ABC_tran ABC transporter 3.2E-25 79 23.10 527 676
AAA_25 AAA domain 0.00027 11 27.00 527 556
AAA_29 P-loop containing region of AAA domain 0.00013 12 27.00 532 554
AAA_22 AAA domain 0.00015 12 27.00 533 558
AAA_16 AAA ATPase domain 3E-06 18 32.60 533 693
SMC_N RecF/RecN/SMC N terminal domain 0.0016 8 40.00 535 554
AAA_23 AAA domain 0.00017 12 27.00 535 555
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00016 12 27.00 536 583
AAA ATPase family associated with various cellular activities (AAA) 0.001 10 20.80 539 560
AAA ATPase family associated with various cellular activities (AAA) 0.26 2 20.80 621 674
SMC_N RecF/RecN/SMC N terminal domain 0.17 1 40.00 647 696
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0031 7 27.00 665 696
ABC2_membrane_7 ABC-2 type transporter 0 687 22.70 705 1109
ABC2_membrane ABC-2 type transporter 2.4E-11 34 25.50 860 1052
DUF5392 Family of unknown function (DUF5392) 0.023 5 25.00 956 1005

1109

DUF3435
V-ATPase_G
DUF5392
DUF1149
DUF3435
RsgA_GTPase
ABC_tran
AAA_25
AAA_29
AAA_22
AAA_16
SMC_N
AAA_23
AAA_21
AAA
AAA
SMC_N
AAA_21
ABC2_membrane_7
ABC2_membrane
DUF5392

References:

AAA_16

DUF3435

V-ATPase_G
9872382 Structure, function and regulation of the vacuolar (H+)-ATPases. FEBS Lett 1998;440:258-263.
10748245 Structure, function and regulation of the plant vacuolar H(+)-translocating ATPase. Biochim Biophys Acta 2000;1465:17-36.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RsgA_GTPase

DUF5392

ABC2_membrane
1303751 A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci 1992;1:1326-1332.

AAA_29

DUF1149

ABC2_membrane_7

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_25

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

AAA_22

AAA_21

Domain	Description	Evalue	Bits	GA	Start	End
DUF3435	Protein of unknown function (DUF3435)	0.68	-1	25.80	340	389
V-ATPase_G	Vacuolar (H+)-ATPase G subunit	0.00036	11	22.90	348	395
DUF5392	Family of unknown function (DUF5392)	0.025	5	25.00	456	485
DUF1149	Protein of unknown function (DUF1149)	0.00028	11	25.00	456	508
DUF3435	Protein of unknown function (DUF3435)	0.0002	10	25.80	475	517
RsgA_GTPase	RsgA GTPase	2.8E-06	17	30.00	516	557
ABC_tran	ABC transporter	3.2E-25	79	23.10	527	676
AAA_25	AAA domain	0.00027	11	27.00	527	556
AAA_29	P-loop containing region of AAA domain	0.00013	12	27.00	532	554
AAA_22	AAA domain	0.00015	12	27.00	533	558
AAA_16	AAA ATPase domain	3E-06	18	32.60	533	693
SMC_N	RecF/RecN/SMC N terminal domain	0.0016	8	40.00	535	554
AAA_23	AAA domain	0.00017	12	27.00	535	555
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00016	12	27.00	536	583
AAA	ATPase family associated with various cellular activities (AAA)	0.001	10	20.80	539	560
AAA	ATPase family associated with various cellular activities (AAA)	0.26	2	20.80	621	674
SMC_N	RecF/RecN/SMC N terminal domain	0.17	1	40.00	647	696
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0031	7	27.00	665	696
ABC2_membrane_7	ABC-2 type transporter	0	687	22.70	705	1109
ABC2_membrane	ABC-2 type transporter	2.4E-11	34	25.50	860	1052
DUF5392	Family of unknown function (DUF5392)	0.023	5	25.00	956	1005