c2pfam

AT1G53950.1 :

Domain Description Evalue Bits GA Start End
Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like 0.0055 5 23.70 20 44
Ubiquitin_4 Ubiquitin-like domain 0.0036 6 22.80 20 46
ubiquitin Ubiquitin family 0.0022 6 20.70 22 46
Ubiquitin_2 Ubiquitin-like domain 0.85 -1 23.10 33 33
Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like 2.5E-15 45 23.70 69 138
ubiquitin Ubiquitin family 8.3E-31 94 20.70 71 141
Ubiquitin_4 Ubiquitin-like domain 0.15 1 22.80 71 99
Ubiquitin_2 Ubiquitin-like domain 4.6E-07 19 23.10 85 138
Rad60-SLD_2 Ubiquitin-2 like Rad60 SUMO-like 2.5E-06 16 23.00 105 138
Ubiquitin_4 Ubiquitin-like domain 0.0011 8 22.80 111 136

144

Rad60-SLD
Ubiquitin_4
ubiquitin
Ubiquitin_2
Rad60-SLD
ubiquitin
Ubiquitin_4
Ubiquitin_2
Rad60-SLD_2
Ubiquitin_4

References:

Ubiquitin_4

ubiquitin
3041007 Structure of ubiquitin refined at 1.8 A resolution. J Mol Biol 1987;194:531-544.
8107144 Structure of tetraubiquitin shows how multiubiquitin chains can be formed. J Mol Biol 1994;236:601-609.
9654451 Structure determination of the small ubiquitin-related modifier SUMO-1. J Mol Biol 1998;280:275-286.
9857030 Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes. J Biol Chem 1998;273:34983-34991.
12826399 A potential proteasome-interacting motif within the ubiquitin-like domain of parkin and other proteins. Trends Biochem Sci 2003;28:280-283.

Ubiquitin_2

Rad60-SLD_2

Rad60-SLD
15660128 Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1. EMBO J. 2005;24:439-451.
19363481 Molecular mimicry of SUMO promotes DNA repair. Nat Struct Mol Biol. 2009;16:509-516.

Domain	Description	Evalue	Bits	GA	Start	End
Rad60-SLD	Ubiquitin-2 like Rad60 SUMO-like	0.0055	5	23.70	20	44
Ubiquitin_4	Ubiquitin-like domain	0.0036	6	22.80	20	46
ubiquitin	Ubiquitin family	0.0022	6	20.70	22	46
Ubiquitin_2	Ubiquitin-like domain	0.85	-1	23.10	33	33
Rad60-SLD	Ubiquitin-2 like Rad60 SUMO-like	2.5E-15	45	23.70	69	138
ubiquitin	Ubiquitin family	8.3E-31	94	20.70	71	141
Ubiquitin_4	Ubiquitin-like domain	0.15	1	22.80	71	99
Ubiquitin_2	Ubiquitin-like domain	4.6E-07	19	23.10	85	138
Rad60-SLD_2	Ubiquitin-2 like Rad60 SUMO-like	2.5E-06	16	23.00	105	138
Ubiquitin_4	Ubiquitin-like domain	0.0011	8	22.80	111	136