c2pfam

AT1G05460.1 :

Domain Description Evalue Bits GA Start End
AAA_11 AAA domain 1.1E-18 58 27.00 397 482
AAA_30 AAA domain 1.4E-16 51 27.00 397 581
ATPase_2 ATPase domain predominantly from Archaea 0.00011 12 33.20 401 448
DEAD DEAD/DEAH box helicase 1.5E-05 15 20.60 403 465
ResIII Type III restriction enzyme, res subunit 9.5E-10 29 20.90 412 559
AAA_16 AAA ATPase domain 0.00019 12 32.60 413 452
AAA_19 AAA domain 2.2E-12 38 25.10 415 579
AAA_22 AAA domain 2.5E-06 18 27.00 415 467
DUF2075 Uncharacterized conserved protein (DUF2075) 2.9E-05 14 20.30 417 468
UvrD-helicase UvrD/REP helicase 7.8E-06 16 20.30 417 465
Helicase_RecD Helicase 7.2E-07 19 22.70 418 481
PhoH PhoH-like protein 0.00028 11 20.10 418 456
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.0073 6 20.90 418 444
AAA ATPase family associated with various cellular activities (AAA) 0.00014 12 20.80 418 437
AAA_11 AAA domain 1.6E-13 41 27.00 512 584
UvrD-helicase UvrD/REP helicase 0.37 0 20.30 536 577
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.029 4 20.90 538 607
PhoH PhoH-like protein 0.14 2 20.10 541 578
AAA_12 AAA domain 0 172 27.00 593 796
UvrD_C UvrD-like helicase C-terminal domain 0.0003 10 25.60 617 750
AAA_19 AAA domain 0.52 1 25.10 694 752
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.036 4 20.90 719 793
UvrD_C UvrD-like helicase C-terminal domain 0.19 1 25.60 777 793

1002

AAA_11
AAA_30
ATPase_2
DEAD
ResIII
AAA_16
AAA_19
AAA_22
DUF2075
UvrD-helicase
Helicase_RecD
PhoH
Viral_helicase1
AAA
AAA_11
UvrD-helicase
Viral_helicase1
PhoH
AAA_12
UvrD_C
AAA_19
Viral_helicase1
UvrD_C

References:

AAA_16

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

AAA_12

AAA_11

DUF2075

UvrD_C

UvrD-helicase
9288744 Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP. Cell 1997;90:635-647.

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

Helicase_RecD

Viral_helicase1
8269709 Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 1993;28:375-430.
10217401 RNA helicase activity of Semliki Forest virus replicase protein NSP2. FEBS Lett 1999;448:19-22.
8057461 ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2. J Virol 1994;68:5804-5810.
10982322 Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. J Virol 2000;74:8803-8811.

ATPase_2

AAA_30

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

AAA_19

ResIII

Domain	Description	Evalue	Bits	GA	Start	End
AAA_11	AAA domain	1.1E-18	58	27.00	397	482
AAA_30	AAA domain	1.4E-16	51	27.00	397	581
ATPase_2	ATPase domain predominantly from Archaea	0.00011	12	33.20	401	448
DEAD	DEAD/DEAH box helicase	1.5E-05	15	20.60	403	465
ResIII	Type III restriction enzyme, res subunit	9.5E-10	29	20.90	412	559
AAA_16	AAA ATPase domain	0.00019	12	32.60	413	452
AAA_19	AAA domain	2.2E-12	38	25.10	415	579
AAA_22	AAA domain	2.5E-06	18	27.00	415	467
DUF2075	Uncharacterized conserved protein (DUF2075)	2.9E-05	14	20.30	417	468
UvrD-helicase	UvrD/REP helicase	7.8E-06	16	20.30	417	465
Helicase_RecD	Helicase	7.2E-07	19	22.70	418	481
PhoH	PhoH-like protein	0.00028	11	20.10	418	456
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.0073	6	20.90	418	444
AAA	ATPase family associated with various cellular activities (AAA)	0.00014	12	20.80	418	437
AAA_11	AAA domain	1.6E-13	41	27.00	512	584
UvrD-helicase	UvrD/REP helicase	0.37	0	20.30	536	577
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.029	4	20.90	538	607
PhoH	PhoH-like protein	0.14	2	20.10	541	578
AAA_12	AAA domain	0	172	27.00	593	796
UvrD_C	UvrD-like helicase C-terminal domain	0.0003	10	25.60	617	750
AAA_19	AAA domain	0.52	1	25.10	694	752
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.036	4	20.90	719	793
UvrD_C	UvrD-like helicase C-terminal domain	0.19	1	25.60	777	793