c2pfam

AT1G55610.1 :

Domain Description Evalue Bits GA Start End
LRRNT_2 Leucine rich repeat N-terminal domain 7.5E-11 32 20.70 34 74
LRR_4 Leucine Rich repeats (2 copies) 0.0012 9 27.00 82 112
LRR_8 Leucine rich repeat 0.0012 8 27.00 82 113
LRR_8 Leucine rich repeat 3.6E-08 23 27.00 102 163
LRR_1 Leucine Rich Repeat 0.22 2 20.60 103 118
LRR_5 BspA type Leucine rich repeat region (6 copies) 2.9E-05 14 27.70 114 180
LRR_6 Leucine Rich repeat 0.00055 10 23.40 124 139
LRR_4 Leucine Rich repeats (2 copies) 6.7E-08 22 27.00 127 167
LRR_1 Leucine Rich Repeat 0.043 4 20.60 127 138
LRR_6 Leucine Rich repeat 0.049 4 23.40 149 164
LRR_8 Leucine rich repeat 2.5E-08 23 27.00 151 213
LRR_1 Leucine Rich Repeat 0.041 5 20.60 152 177
LRR_6 Leucine Rich repeat 0.0074 6 23.40 174 189
LRR_4 Leucine Rich repeats (2 copies) 1.4E-06 18 27.00 175 220
LRR_1 Leucine Rich Repeat 0.0014 9 20.60 176 195
LRR_8 Leucine rich repeat 4.4E-08 22 27.00 176 238
LRR_8 Leucine rich repeat 9.5E-06 15 27.00 202 263
LRR_1 Leucine Rich Repeat 0.0025 8 20.60 202 217
LRR_6 Leucine Rich repeat 0.0005 10 23.40 202 215
LRR_4 Leucine Rich repeats (2 copies) 6.5E-06 16 27.00 227 265
LRR_8 Leucine rich repeat 0.00032 10 27.00 249 289
LRR_6 Leucine Rich repeat 0.0076 6 23.40 250 265
LRR_8 Leucine rich repeat 3.9E-06 16 27.00 253 312
LRR_1 Leucine Rich Repeat 0.0024 8 20.60 253 269
LRR_6 Leucine Rich repeat 0.017 5 23.40 277 292
LRR_4 Leucine Rich repeats (2 copies) 6.8E-07 19 27.00 277 314
LRR_1 Leucine Rich Repeat 0.023 5 20.60 278 298
LRR_8 Leucine rich repeat 2E-06 17 27.00 278 338
LRR_6 Leucine Rich repeat 0.0045 7 23.40 301 317
LRR_4 Leucine Rich repeats (2 copies) 8.5E-05 13 27.00 303 338
LRR_1 Leucine Rich Repeat 0.067 4 20.60 304 323
LRR_1 Leucine Rich Repeat 0.13 3 20.60 328 343
LRR_8 Leucine rich repeat 5.8E-08 22 27.00 328 386
LRR_4 Leucine Rich repeats (2 copies) 1.4E-07 21 27.00 352 389
LRR_6 Leucine Rich repeat 0.24 1 23.40 353 365
LRR_8 Leucine rich repeat 7.4E-07 18 27.00 354 387
LRR_6 Leucine Rich repeat 0.0005 10 23.40 373 389
LRR_1 Leucine Rich Repeat 0.00037 11 20.60 376 398
LRR_8 Leucine rich repeat 9E-08 21 27.00 403 462
LRR_4 Leucine Rich repeats (2 copies) 5.5E-06 16 27.00 404 440
LRR_6 Leucine Rich repeat 0.0014 8 23.40 424 440
LRR_5 BspA type Leucine rich repeat region (6 copies) 0.64 -1 27.70 424 486
LRR_1 Leucine Rich Repeat 0.0087 7 20.60 427 445
LRR_4 Leucine Rich repeats (2 copies) 0.31 1 27.00 447 463
LRR_8 Leucine rich repeat 2.8E-08 23 27.00 450 511
LRR_8 Leucine rich repeat 1.7E-09 27 27.00 476 535
LRR_1 Leucine Rich Repeat 0.0023 8 20.60 476 498
LRR_4 Leucine Rich repeats (2 copies) 0.00035 11 27.00 476 500
LRR_4 Leucine Rich repeats (2 copies) 0.00025 11 27.00 500 536
LRR_1 Leucine Rich Repeat 0.13 3 20.60 504 522
LRR_8 Leucine rich repeat 5.3E-09 25 27.00 504 559
LRR_8 Leucine rich repeat 2.3E-06 17 27.00 524 567
LRR_1 Leucine Rich Repeat 0.63 1 20.60 525 546
LRR_4 Leucine Rich repeats (2 copies) 0.0018 8 27.00 547 567
LRR_1 Leucine Rich Repeat 0.064 4 20.60 549 566
LRR_6 Leucine Rich repeat 0.41 1 23.40 552 562
LRR_8 Leucine rich repeat 0.26 1 27.00 633 654
LRR_8 Leucine rich repeat 3.8E-15 45 27.00 665 723
LRR_1 Leucine Rich Repeat 0.0001 12 20.60 665 686
LRR_6 Leucine Rich repeat 0.0078 6 23.40 665 677
LRR_4 Leucine Rich repeats (2 copies) 1.3E-07 21 27.00 665 699
LRR_4 Leucine Rich repeats (2 copies) 3.8E-05 14 27.00 691 725
LRR_1 Leucine Rich Repeat 0.033 5 20.60 691 710
LRR_6 Leucine Rich repeat 0.069 3 23.40 692 700
LRR_6 Leucine Rich repeat 0.061 3 23.40 711 725
LRR_1 Leucine Rich Repeat 0.23 2 20.60 715 728
Syndecan Syndecan domain 1.6E-05 14 31.40 771 801
Pkinase Protein kinase domain 0 148 20.40 861 1132
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 0 142 23.10 862 1132
ABC1 ABC1 family 0.00016 11 20.60 863 887

1166

LRRNT_2
LRR_4
LRR_8
LRR_8
LRR_1
LRR_5
LRR_6
LRR_4
LRR_1
LRR_6
LRR_8
LRR_1
LRR_6
LRR_4
LRR_1
LRR_8
LRR_8
LRR_1
LRR_6
LRR_4
LRR_8
LRR_6
LRR_8
LRR_1
LRR_6
LRR_4
LRR_1
LRR_8
LRR_6
LRR_4
LRR_1
LRR_1
LRR_8
LRR_4
LRR_6
LRR_8
LRR_6
LRR_1
LRR_8
LRR_4
LRR_6
LRR_5
LRR_1
LRR_4
LRR_8
LRR_8
LRR_1
LRR_4
LRR_4
LRR_1
LRR_8
LRR_8
LRR_1
LRR_4
LRR_1
LRR_6
LRR_8
LRR_8
LRR_1
LRR_6
LRR_4
LRR_4
LRR_1
LRR_6
LRR_6
LRR_1
Syndecan
Pkinase
PK_Tyr_Ser-Thr
ABC1

References:

LRR_8

ABC1
1648478 ABC1, a novel yeast nuclear gene has a dual function in mitochondria: it suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J 1991;10:2023-2031.
9422602 Identification and characterization of aarF, a locus required for production of ubiquinone in Providencia stuartii and Escherichia coli and for expression of 2'-N-acetyltransferase in P. stuartii. J Bacteriol 1998;180:128-135.

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRRNT_2
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.

LRR_6

LRR_5

LRR_4

Syndecan
9582338 Solution structure of a syndecan-4 cytoplasmic domain and its interaction with phosphatidylinositol 4,5-bisphosphate. J Biol Chem 1998;273:13022-13029.

PK_Tyr_Ser-Thr

Domain	Description	Evalue	Bits	GA	Start	End
LRRNT_2	Leucine rich repeat N-terminal domain	7.5E-11	32	20.70	34	74
LRR_4	Leucine Rich repeats (2 copies)	0.0012	9	27.00	82	112
LRR_8	Leucine rich repeat	0.0012	8	27.00	82	113
LRR_8	Leucine rich repeat	3.6E-08	23	27.00	102	163
LRR_1	Leucine Rich Repeat	0.22	2	20.60	103	118
LRR_5	BspA type Leucine rich repeat region (6 copies)	2.9E-05	14	27.70	114	180
LRR_6	Leucine Rich repeat	0.00055	10	23.40	124	139
LRR_4	Leucine Rich repeats (2 copies)	6.7E-08	22	27.00	127	167
LRR_1	Leucine Rich Repeat	0.043	4	20.60	127	138
LRR_6	Leucine Rich repeat	0.049	4	23.40	149	164
LRR_8	Leucine rich repeat	2.5E-08	23	27.00	151	213
LRR_1	Leucine Rich Repeat	0.041	5	20.60	152	177
LRR_6	Leucine Rich repeat	0.0074	6	23.40	174	189
LRR_4	Leucine Rich repeats (2 copies)	1.4E-06	18	27.00	175	220
LRR_1	Leucine Rich Repeat	0.0014	9	20.60	176	195
LRR_8	Leucine rich repeat	4.4E-08	22	27.00	176	238
LRR_8	Leucine rich repeat	9.5E-06	15	27.00	202	263
LRR_1	Leucine Rich Repeat	0.0025	8	20.60	202	217
LRR_6	Leucine Rich repeat	0.0005	10	23.40	202	215
LRR_4	Leucine Rich repeats (2 copies)	6.5E-06	16	27.00	227	265
LRR_8	Leucine rich repeat	0.00032	10	27.00	249	289
LRR_6	Leucine Rich repeat	0.0076	6	23.40	250	265
LRR_8	Leucine rich repeat	3.9E-06	16	27.00	253	312
LRR_1	Leucine Rich Repeat	0.0024	8	20.60	253	269
LRR_6	Leucine Rich repeat	0.017	5	23.40	277	292
LRR_4	Leucine Rich repeats (2 copies)	6.8E-07	19	27.00	277	314
LRR_1	Leucine Rich Repeat	0.023	5	20.60	278	298
LRR_8	Leucine rich repeat	2E-06	17	27.00	278	338
LRR_6	Leucine Rich repeat	0.0045	7	23.40	301	317
LRR_4	Leucine Rich repeats (2 copies)	8.5E-05	13	27.00	303	338
LRR_1	Leucine Rich Repeat	0.067	4	20.60	304	323
LRR_1	Leucine Rich Repeat	0.13	3	20.60	328	343
LRR_8	Leucine rich repeat	5.8E-08	22	27.00	328	386
LRR_4	Leucine Rich repeats (2 copies)	1.4E-07	21	27.00	352	389
LRR_6	Leucine Rich repeat	0.24	1	23.40	353	365
LRR_8	Leucine rich repeat	7.4E-07	18	27.00	354	387
LRR_6	Leucine Rich repeat	0.0005	10	23.40	373	389
LRR_1	Leucine Rich Repeat	0.00037	11	20.60	376	398
LRR_8	Leucine rich repeat	9E-08	21	27.00	403	462
LRR_4	Leucine Rich repeats (2 copies)	5.5E-06	16	27.00	404	440
LRR_6	Leucine Rich repeat	0.0014	8	23.40	424	440
LRR_5	BspA type Leucine rich repeat region (6 copies)	0.64	-1	27.70	424	486
LRR_1	Leucine Rich Repeat	0.0087	7	20.60	427	445
LRR_4	Leucine Rich repeats (2 copies)	0.31	1	27.00	447	463
LRR_8	Leucine rich repeat	2.8E-08	23	27.00	450	511
LRR_8	Leucine rich repeat	1.7E-09	27	27.00	476	535
LRR_1	Leucine Rich Repeat	0.0023	8	20.60	476	498
LRR_4	Leucine Rich repeats (2 copies)	0.00035	11	27.00	476	500
LRR_4	Leucine Rich repeats (2 copies)	0.00025	11	27.00	500	536
LRR_1	Leucine Rich Repeat	0.13	3	20.60	504	522
LRR_8	Leucine rich repeat	5.3E-09	25	27.00	504	559
LRR_8	Leucine rich repeat	2.3E-06	17	27.00	524	567
LRR_1	Leucine Rich Repeat	0.63	1	20.60	525	546
LRR_4	Leucine Rich repeats (2 copies)	0.0018	8	27.00	547	567
LRR_1	Leucine Rich Repeat	0.064	4	20.60	549	566
LRR_6	Leucine Rich repeat	0.41	1	23.40	552	562
LRR_8	Leucine rich repeat	0.26	1	27.00	633	654
LRR_8	Leucine rich repeat	3.8E-15	45	27.00	665	723
LRR_1	Leucine Rich Repeat	0.0001	12	20.60	665	686
LRR_6	Leucine Rich repeat	0.0078	6	23.40	665	677
LRR_4	Leucine Rich repeats (2 copies)	1.3E-07	21	27.00	665	699
LRR_4	Leucine Rich repeats (2 copies)	3.8E-05	14	27.00	691	725
LRR_1	Leucine Rich Repeat	0.033	5	20.60	691	710
LRR_6	Leucine Rich repeat	0.069	3	23.40	692	700
LRR_6	Leucine Rich repeat	0.061	3	23.40	711	725
LRR_1	Leucine Rich Repeat	0.23	2	20.60	715	728
Syndecan	Syndecan domain	1.6E-05	14	31.40	771	801
Pkinase	Protein kinase domain	0	148	20.40	861	1132
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	0	142	23.10	862	1132
ABC1	ABC1 family	0.00016	11	20.60	863	887