AT1G55890.1 :

DomainDescriptionEvalueBitsGAStartEnd
PPR_3Pentatricopeptide repeat domain0.059425.0063102
Cas9-BHBridge helix of CRISPR-associated endonuclease Cas90.0019826.307999
PPR_longPentacotripeptide-repeat region of PRORP0.0032727.0088160
ClathrinRegion in Clathrin and VPS0.0014923.60113207
PPRPPR repeat1.6E-072225.00115140
PPR_2PPR repeat family 6E-092730.00115154
PPR_1PPR repeat3.7E-051423.80115135
TPR_19Tetratricopeptide repeat0.67125.00116138
TPR_8Tetratricopeptide repeat0.048525.70117134
TPR_1Tetratricopeptide repeat0.36120.40118133
TPR_7Tetratricopeptide repeat0.55127.90118134
TPR_2Tetratricopeptide repeat0.41222.40119134
ANAPC3Anaphase-promoting complex, cyclosome, subunit 30.83027.20120158
TPR_12Tetratricopeptide repeat0.26230.10125169
PPR_3Pentatricopeptide repeat domain2.3E-113425.00130190
PPR_1PPR repeat0.1323.80139154
PPR_2PPR repeat family 8.1E-113230.00143191
PPRPPR repeat9.6E-051325.00146170
Cas9-BHBridge helix of CRISPR-associated endonuclease Cas90.099326.30162174
ATP13Mitochondrial ATPase expression0.032526.70173209
PPR_longPentacotripeptide-repeat region of PRORP3.4E-051427.00175255
PPR_1PPR repeat2.4E-113423.80176206
PPR_2PPR repeat family 6.7E-164930.00178222
PPRPPR repeat2.1E-082525.00181211
ClathrinRegion in Clathrin and VPS0.0079623.60182228
MRP-S27Mitochondrial 28S ribosomal protein S270.67-125.90185228
TPR_19Tetratricopeptide repeat0.13325.00185208
PPR_3Pentatricopeptide repeat domain6.3E-113325.00202255
PPR_1PPR repeat1.4E-051523.80209221
PPR_2PPR repeat family 1.8E-072230.00215261
PPRPPR repeat0.000321125.00216246
PPR_longPentacotripeptide-repeat region of PRORP4E-082327.00236342
PPR_3Pentatricopeptide repeat domain3.2E-103025.00237292
PPR_1PPR repeat0.87023.80245254
PPR_2PPR repeat family 1.7E-103130.00249294
PPRPPR repeat0.034525.00252281
PPR_3Pentatricopeptide repeat domain1.5E-082525.00272330
PPR_1PPR repeat1.2E-072223.80280305
PPR_2PPR repeat family 3.5E-144330.00283332
PPRPPR repeat3.2E-082425.00286315
MRP-S27Mitochondrial 28S ribosomal protein S271.6E-051425.90288347
B12-binding_2B12 binding domain8.3E-051321.30295335
TPR_14Tetratricopeptide repeat0.061523.50296325
4HB_MCP_1Four helix bundle sensory module for signal transduction0.49027.00296316
TPR_7Tetratricopeptide repeat0.42127.90297310
TPR_2Tetratricopeptide repeat0.16322.40297313
TPR_8Tetratricopeptide repeat0.025625.70297312
TPR_19Tetratricopeptide repeat0.011725.00298344
TPR_12Tetratricopeptide repeat0.0022930.10298346
TPR_1Tetratricopeptide repeat0.048420.40298312
ANAPC3Anaphase-promoting complex, cyclosome, subunit 30.000831027.20299358
ClathrinRegion in Clathrin and VPS0.067323.60302346
PPR_3Pentatricopeptide repeat domain0.0053725.00309345
ATP13Mitochondrial ATPase expression0.0054726.70313351
PPR_1PPR repeat6.6E-082323.80315345
PPR_2PPR repeat family 0.000991030.00326345
PPRPPR repeat9.5E-051325.00329345
TPR_14Tetratricopeptide repeat0.13423.50329345
4HB_MCP_1Four helix bundle sensory module for signal transduction0.00071027.00330375
TPR_7Tetratricopeptide repeat0.0068727.90331346
TPR_2Tetratricopeptide repeat0.021622.40331345
TPR_19Tetratricopeptide repeat0.061425.00332348
TPR_1Tetratricopeptide repeat0.055420.40332345
TPR_8Tetratricopeptide repeat0.31225.70333345
ClathrinRegion in Clathrin and VPS0.7023.60366389

 398

PPR_3
Cas9-BH
PPR_long
Clathrin
PPR
PPR_2
PPR_1
TPR_19
TPR_8
TPR_1
TPR_7
TPR_2
ANAPC3
TPR_12
PPR_3
PPR_1
PPR_2
PPR
Cas9-BH
ATP13
PPR_long
PPR_1
PPR_2
PPR
Clathrin
MRP-S27
TPR_19
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
B12-binding_2
TPR_14
4HB_MCP_1
TPR_7
TPR_2
TPR_8
TPR_19
TPR_12
TPR_1
ANAPC3
Clathrin
PPR_3
ATP13
PPR_1
PPR_2
PPR
TPR_14
4HB_MCP_1
TPR_7
TPR_2
TPR_19
TPR_1
TPR_8
Clathrin


References:

TPR_7

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

4HB_MCP_1

Cas9-BH

ANAPC3

ATP13

B12-binding_2
7992050 How a protein binds B12: A 3.0 A X-ray structure of B12-binding domains of methionine synthase Science 1994;266:1669-1674.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_14

TPR_12

TPR_8