c2pfam

AT5G18475.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 8.3E-05 12 27.00 60 177
PPR_2 PPR repeat family 0.00019 11 30.00 65 100
PPR_3 Pentatricopeptide repeat domain 0.00091 9 25.00 81 120
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.85 -2 25.90 84 107
PPR PPR repeat 0.0016 9 25.00 91 117
PPR PPR repeat 0.0092 6 25.00 129 150
PPR_2 PPR repeat family 0.19 2 30.00 130 167
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00081 8 25.90 184 222
PPR_3 Pentatricopeptide repeat domain 5E-09 26 25.00 188 240
PPR_long Pentacotripeptide-repeat region of PRORP 8.5E-08 21 27.00 190 261
PPR_1 PPR repeat 5.1E-11 32 23.80 191 223
ATP13 Mitochondrial ATPase expression 0.33 1 26.70 193 225
PPR_2 PPR repeat family 1.3E-15 47 30.00 194 242
PPR PPR repeat 9E-08 22 25.00 198 227
Self-incomp_S1 Plant self-incompatibility protein S1 5.2E-06 17 21.10 202 284
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.12 2 27.20 206 256
ATP13 Mitochondrial ATPase expression 0.14 2 26.70 219 261
MRP-S27 Mitochondrial 28S ribosomal protein S27 2.5E-05 13 25.90 230 291
PPR_2 PPR repeat family 3.2E-19 59 30.00 230 280
PPR_1 PPR repeat 6.8E-09 25 23.80 230 258
PPR PPR repeat 2.7E-08 23 25.00 233 261
BTAD Bacterial transcriptional activator domain 0.015 5 21.00 235 271
TPR_19 Tetratricopeptide repeat 0.2 2 25.00 237 257
TPR_19 Tetratricopeptide repeat 0.051 4 25.00 244 292
PPR_long Pentacotripeptide-repeat region of PRORP 1.4E-11 34 27.00 249 385
PPR_3 Pentatricopeptide repeat domain 5.8E-15 45 25.00 255 313
ATP13 Mitochondrial ATPase expression 0.046 3 26.70 256 295
PPR_1 PPR repeat 3.6E-16 48 23.80 263 295
PPR_2 PPR repeat family 3.4E-20 62 30.00 266 315
PPR PPR repeat 1.1E-12 37 25.00 269 299
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.78 0 27.20 279 326
TPR_19 Tetratricopeptide repeat 0.2 2 25.00 285 329
PPR_1 PPR repeat 1.2E-12 37 23.80 297 328
PPR_2 PPR repeat family 4.4E-11 33 30.00 301 342
PPR PPR repeat 2.3E-08 24 25.00 306 333
BTAD Bacterial transcriptional activator domain 0.21 2 21.00 306 332
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.014 4 25.90 308 363
PPR_3 Pentatricopeptide repeat domain 3E-14 43 25.00 326 380
PPR_1 PPR repeat 8.3E-15 44 23.80 333 365
PPR_2 PPR repeat family 5.4E-17 52 30.00 337 384
PPR PPR repeat 1.4E-11 34 25.00 341 369
TPR_19 Tetratricopeptide repeat 0.0053 7 25.00 341 362
BTAD Bacterial transcriptional activator domain 0.32 1 21.00 341 361
ATP13 Mitochondrial ATPase expression 0.037 4 26.70 342 363
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.011 6 27.20 346 366
PPR_1 PPR repeat 1.7E-07 21 23.80 369 398
PPR_2 PPR repeat family 1.1E-11 35 30.00 372 419
PPR PPR repeat 2.2E-07 21 25.00 375 404
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.019 3 25.90 375 436
BTAD Bacterial transcriptional activator domain 0.12 2 21.00 382 399
TPR_19 Tetratricopeptide repeat 0.027 5 25.00 386 433
PPR_long Pentacotripeptide-repeat region of PRORP 5.5E-05 12 27.00 389 454
PPR_3 Pentatricopeptide repeat domain 3.6E-05 14 25.00 397 449
PPR_1 PPR repeat 1.5E-09 27 23.80 403 434
PPR PPR repeat 1.2E-07 22 25.00 410 439
PPR_2 PPR repeat family 9.7E-07 19 30.00 413 454
ATP13 Mitochondrial ATPase expression 0.043 3 26.70 414 436
PPR_1 PPR repeat 0.52 0 23.80 438 460
PPR PPR repeat 0.95 0 25.00 445 466
PPR PPR repeat 0.026 5 25.00 480 504
PPR_2 PPR repeat family 0.43 1 30.00 480 503

506

PPR_long
PPR_2
PPR_3
MRP-S27
PPR
PPR
PPR_2
MRP-S27
PPR_3
PPR_long
PPR_1
ATP13
PPR_2
PPR
Self-incomp_S1
ANAPC3
ATP13
MRP-S27
PPR_2
PPR_1
PPR
BTAD
TPR_19
TPR_19
PPR_long
PPR_3
ATP13
PPR_1
PPR_2
PPR
ANAPC3
TPR_19
PPR_1
PPR_2
PPR
BTAD
MRP-S27
PPR_3
PPR_1
PPR_2
PPR
TPR_19
BTAD
ATP13
ANAPC3
PPR_1
PPR_2
PPR
MRP-S27
BTAD
TPR_19
PPR_long
PPR_3
PPR_1
PPR
PPR_2
ATP13
PPR_1
PPR
PPR
PPR_2

References:

ANAPC3

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

TPR_19

Self-incomp_S1
8134385 Cloning and expression of a distinctive class of self-incompatibility (S) gene from Papaver rhoeas L. Proc Natl Acad Sci U S A 1994;91:2265-2269.

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

ATP13

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	8.3E-05	12	27.00	60	177
PPR_2	PPR repeat family	0.00019	11	30.00	65	100
PPR_3	Pentatricopeptide repeat domain	0.00091	9	25.00	81	120
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.85	-2	25.90	84	107
PPR	PPR repeat	0.0016	9	25.00	91	117
PPR	PPR repeat	0.0092	6	25.00	129	150
PPR_2	PPR repeat family	0.19	2	30.00	130	167
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00081	8	25.90	184	222
PPR_3	Pentatricopeptide repeat domain	5E-09	26	25.00	188	240
PPR_long	Pentacotripeptide-repeat region of PRORP	8.5E-08	21	27.00	190	261
PPR_1	PPR repeat	5.1E-11	32	23.80	191	223
ATP13	Mitochondrial ATPase expression	0.33	1	26.70	193	225
PPR_2	PPR repeat family	1.3E-15	47	30.00	194	242
PPR	PPR repeat	9E-08	22	25.00	198	227
Self-incomp_S1	Plant self-incompatibility protein S1	5.2E-06	17	21.10	202	284
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.12	2	27.20	206	256
ATP13	Mitochondrial ATPase expression	0.14	2	26.70	219	261
MRP-S27	Mitochondrial 28S ribosomal protein S27	2.5E-05	13	25.90	230	291
PPR_2	PPR repeat family	3.2E-19	59	30.00	230	280
PPR_1	PPR repeat	6.8E-09	25	23.80	230	258
PPR	PPR repeat	2.7E-08	23	25.00	233	261
BTAD	Bacterial transcriptional activator domain	0.015	5	21.00	235	271
TPR_19	Tetratricopeptide repeat	0.2	2	25.00	237	257
TPR_19	Tetratricopeptide repeat	0.051	4	25.00	244	292
PPR_long	Pentacotripeptide-repeat region of PRORP	1.4E-11	34	27.00	249	385
PPR_3	Pentatricopeptide repeat domain	5.8E-15	45	25.00	255	313
ATP13	Mitochondrial ATPase expression	0.046	3	26.70	256	295
PPR_1	PPR repeat	3.6E-16	48	23.80	263	295
PPR_2	PPR repeat family	3.4E-20	62	30.00	266	315
PPR	PPR repeat	1.1E-12	37	25.00	269	299
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.78	0	27.20	279	326
TPR_19	Tetratricopeptide repeat	0.2	2	25.00	285	329
PPR_1	PPR repeat	1.2E-12	37	23.80	297	328
PPR_2	PPR repeat family	4.4E-11	33	30.00	301	342
PPR	PPR repeat	2.3E-08	24	25.00	306	333
BTAD	Bacterial transcriptional activator domain	0.21	2	21.00	306	332
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.014	4	25.90	308	363
PPR_3	Pentatricopeptide repeat domain	3E-14	43	25.00	326	380
PPR_1	PPR repeat	8.3E-15	44	23.80	333	365
PPR_2	PPR repeat family	5.4E-17	52	30.00	337	384
PPR	PPR repeat	1.4E-11	34	25.00	341	369
TPR_19	Tetratricopeptide repeat	0.0053	7	25.00	341	362
BTAD	Bacterial transcriptional activator domain	0.32	1	21.00	341	361
ATP13	Mitochondrial ATPase expression	0.037	4	26.70	342	363
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.011	6	27.20	346	366
PPR_1	PPR repeat	1.7E-07	21	23.80	369	398
PPR_2	PPR repeat family	1.1E-11	35	30.00	372	419
PPR	PPR repeat	2.2E-07	21	25.00	375	404
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.019	3	25.90	375	436
BTAD	Bacterial transcriptional activator domain	0.12	2	21.00	382	399
TPR_19	Tetratricopeptide repeat	0.027	5	25.00	386	433
PPR_long	Pentacotripeptide-repeat region of PRORP	5.5E-05	12	27.00	389	454
PPR_3	Pentatricopeptide repeat domain	3.6E-05	14	25.00	397	449
PPR_1	PPR repeat	1.5E-09	27	23.80	403	434
PPR	PPR repeat	1.2E-07	22	25.00	410	439
PPR_2	PPR repeat family	9.7E-07	19	30.00	413	454
ATP13	Mitochondrial ATPase expression	0.043	3	26.70	414	436
PPR_1	PPR repeat	0.52	0	23.80	438	460
PPR	PPR repeat	0.95	0	25.00	445	466
PPR	PPR repeat	0.026	5	25.00	480	504
PPR_2	PPR repeat family	0.43	1	30.00	480	503