c2pfam

AT1G05750.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 4.1E-11 32 30.00 35 81
PPR PPR repeat 0.00023 11 25.00 37 66
PPR_1 PPR repeat 0.0035 7 23.80 37 62
PPR_3 Pentatricopeptide repeat domain 4.4E-05 13 25.00 39 83
TPR_14 Tetratricopeptide repeat 0.037 5 23.50 39 62
TPR_16 Tetratricopeptide repeat 0.059 4 32.70 41 58
TPR_19 Tetratricopeptide repeat 0.43 1 25.00 48 71
PPR_long Pentacotripeptide-repeat region of PRORP 0.037 3 27.00 49 78
PPR_1 PPR repeat 0.0084 5 23.80 66 81
PPR_3 Pentatricopeptide repeat domain 0.19 1 25.00 113 138
PPR PPR repeat 4.2E-06 16 25.00 113 139
PPR_2 PPR repeat family 1.5E-05 15 30.00 113 139
PPR_long Pentacotripeptide-repeat region of PRORP 0.72 -2 27.00 113 168
PPR_1 PPR repeat 0.0012 8 23.80 114 136
TPR_19 Tetratricopeptide repeat 0.0014 9 25.00 122 170
ESCRT-II ESCRT-II complex subunit 0.0021 8 21.00 126 197
PPR_2 PPR repeat family 5.6E-13 38 30.00 138 170
PPR_1 PPR repeat 1.3E-11 34 23.80 139 166
PPR_3 Pentatricopeptide repeat domain 0.00098 9 25.00 139 168
PPR PPR repeat 1.8E-12 36 25.00 141 170
TPR_14 Tetratricopeptide repeat 0.016 6 23.50 143 168
TPR_16 Tetratricopeptide repeat 0.65 0 32.70 149 164
PPR_1 PPR repeat 1.8E-05 14 23.80 169 198
PPR_3 Pentatricopeptide repeat domain 0.00033 10 25.00 170 214
PPR_2 PPR repeat family 7.7E-11 32 30.00 170 208
PPR PPR repeat 2.5E-09 26 25.00 172 202
PPR_long Pentacotripeptide-repeat region of PRORP 0.011 4 27.00 173 255
PPR_3 Pentatricopeptide repeat domain 0.00043 10 25.00 234 273
PPR_2 PPR repeat family 4.8E-06 16 30.00 240 271
PPR PPR repeat 3.4E-08 23 25.00 245 270
PPR_1 PPR repeat 4.1E-05 13 23.80 245 268
ESCRT-II ESCRT-II complex subunit 0.12 2 21.00 258 300
PPR_1 PPR repeat 0.00041 10 23.80 270 298
PPR_2 PPR repeat family 6.7E-13 38 30.00 271 318
PPR PPR repeat 2.9E-09 26 25.00 273 303
PPR_long Pentacotripeptide-repeat region of PRORP 1.2E-07 21 27.00 288 418
PPR_3 Pentatricopeptide repeat domain 2.1E-07 20 25.00 295 353
PPR_1 PPR repeat 0.0036 7 23.80 301 312
PPR PPR repeat 8E-05 12 25.00 308 335
PPR_2 PPR repeat family 0.25 1 30.00 314 335
PPR_3 Pentatricopeptide repeat domain 0.043 3 25.00 340 370
PPR_1 PPR repeat 1.4E-06 17 23.80 345 369
PPR PPR repeat 6.9E-07 19 25.00 345 370
PPR_2 PPR repeat family 0.00019 11 30.00 346 376
TPR_14 Tetratricopeptide repeat 0.0074 7 23.50 348 367
TPR_19 Tetratricopeptide repeat 0.0027 8 25.00 349 373
TPR_16 Tetratricopeptide repeat 0.022 5 32.70 351 373
PPR_3 Pentatricopeptide repeat domain 0.53 0 25.00 372 394
PPR_2 PPR repeat family 0.89 -1 30.00 373 403
PPR PPR repeat 9.1E-05 12 25.00 413 441
PPR_1 PPR repeat 0.037 3 23.80 415 437
PPR_2 PPR repeat family 0.011 5 30.00 418 441

500

PPR_2
PPR
PPR_1
PPR_3
TPR_14
TPR_16
TPR_19
PPR_long
PPR_1
PPR_3
PPR
PPR_2
PPR_long
PPR_1
TPR_19
ESCRT-II
PPR_2
PPR_1
PPR_3
PPR
TPR_14
TPR_16
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_2
PPR
PPR_1
ESCRT-II
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
TPR_14
TPR_19
TPR_16
PPR_3
PPR_2
PPR
PPR_1
PPR_2

References:

TPR_19

ESCRT-II
12194858 Endosome-associated complex, ESCRT-II, recruits transport machinery for protein sorting at the multivesicular body. Dev Cell 2002;3:283-289.
15469844 ESCRT-II, an endosome-associated complex required for protein sorting: crystal structure and interactions with ESCRT-III and membranes. Dev Cell 2004;7:559-569.

TPR_16

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	4.1E-11	32	30.00	35	81
PPR	PPR repeat	0.00023	11	25.00	37	66
PPR_1	PPR repeat	0.0035	7	23.80	37	62
PPR_3	Pentatricopeptide repeat domain	4.4E-05	13	25.00	39	83
TPR_14	Tetratricopeptide repeat	0.037	5	23.50	39	62
TPR_16	Tetratricopeptide repeat	0.059	4	32.70	41	58
TPR_19	Tetratricopeptide repeat	0.43	1	25.00	48	71
PPR_long	Pentacotripeptide-repeat region of PRORP	0.037	3	27.00	49	78
PPR_1	PPR repeat	0.0084	5	23.80	66	81
PPR_3	Pentatricopeptide repeat domain	0.19	1	25.00	113	138
PPR	PPR repeat	4.2E-06	16	25.00	113	139
PPR_2	PPR repeat family	1.5E-05	15	30.00	113	139
PPR_long	Pentacotripeptide-repeat region of PRORP	0.72	-2	27.00	113	168
PPR_1	PPR repeat	0.0012	8	23.80	114	136
TPR_19	Tetratricopeptide repeat	0.0014	9	25.00	122	170
ESCRT-II	ESCRT-II complex subunit	0.0021	8	21.00	126	197
PPR_2	PPR repeat family	5.6E-13	38	30.00	138	170
PPR_1	PPR repeat	1.3E-11	34	23.80	139	166
PPR_3	Pentatricopeptide repeat domain	0.00098	9	25.00	139	168
PPR	PPR repeat	1.8E-12	36	25.00	141	170
TPR_14	Tetratricopeptide repeat	0.016	6	23.50	143	168
TPR_16	Tetratricopeptide repeat	0.65	0	32.70	149	164
PPR_1	PPR repeat	1.8E-05	14	23.80	169	198
PPR_3	Pentatricopeptide repeat domain	0.00033	10	25.00	170	214
PPR_2	PPR repeat family	7.7E-11	32	30.00	170	208
PPR	PPR repeat	2.5E-09	26	25.00	172	202
PPR_long	Pentacotripeptide-repeat region of PRORP	0.011	4	27.00	173	255
PPR_3	Pentatricopeptide repeat domain	0.00043	10	25.00	234	273
PPR_2	PPR repeat family	4.8E-06	16	30.00	240	271
PPR	PPR repeat	3.4E-08	23	25.00	245	270
PPR_1	PPR repeat	4.1E-05	13	23.80	245	268
ESCRT-II	ESCRT-II complex subunit	0.12	2	21.00	258	300
PPR_1	PPR repeat	0.00041	10	23.80	270	298
PPR_2	PPR repeat family	6.7E-13	38	30.00	271	318
PPR	PPR repeat	2.9E-09	26	25.00	273	303
PPR_long	Pentacotripeptide-repeat region of PRORP	1.2E-07	21	27.00	288	418
PPR_3	Pentatricopeptide repeat domain	2.1E-07	20	25.00	295	353
PPR_1	PPR repeat	0.0036	7	23.80	301	312
PPR	PPR repeat	8E-05	12	25.00	308	335
PPR_2	PPR repeat family	0.25	1	30.00	314	335
PPR_3	Pentatricopeptide repeat domain	0.043	3	25.00	340	370
PPR_1	PPR repeat	1.4E-06	17	23.80	345	369
PPR	PPR repeat	6.9E-07	19	25.00	345	370
PPR_2	PPR repeat family	0.00019	11	30.00	346	376
TPR_14	Tetratricopeptide repeat	0.0074	7	23.50	348	367
TPR_19	Tetratricopeptide repeat	0.0027	8	25.00	349	373
TPR_16	Tetratricopeptide repeat	0.022	5	32.70	351	373
PPR_3	Pentatricopeptide repeat domain	0.53	0	25.00	372	394
PPR_2	PPR repeat family	0.89	-1	30.00	373	403
PPR	PPR repeat	9.1E-05	12	25.00	413	441
PPR_1	PPR repeat	0.037	3	23.80	415	437
PPR_2	PPR repeat family	0.011	5	30.00	418	441