c2pfam

AT1G05910.1 :

Domain Description Evalue Bits GA Start End
AAA_7 P-loop containing dynein motor region 0.00022 11 25.80 406 439
ABC_tran ABC transporter 0.00039 12 23.10 410 497
AAA_16 AAA ATPase domain 2.9E-07 22 32.60 415 526
TIP49 TIP49 C-terminus 9E-06 16 23.80 416 465
Sigma54_activat Sigma-54 interaction domain 0.00071 10 20.20 416 444
IstB_IS21 IstB-like ATP binding protein 6.2E-10 30 24.10 416 499
Parvo_NS1 Parvovirus non-structural protein NS1 0.00034 10 20.00 417 439
AAA_5 AAA domain (dynein-related subfamily) 2.2E-07 22 20.80 417 494
AAA_18 AAA domain 1.8E-06 19 29.40 418 467
AAA_22 AAA domain 0.00011 13 27.00 418 440
AAA ATPase family associated with various cellular activities (AAA) 0 134 20.80 418 552
AAA_30 AAA domain 1.8E-05 15 27.00 418 487
RNA_helicase RNA helicase 4.3E-05 15 21.50 418 475
Mg_chelatase Magnesium chelatase, subunit ChlI 5.2E-05 13 20.30 418 438
AAA_25 AAA domain 9.1E-05 13 27.00 418 448
AAA_33 AAA domain 0.0001 13 27.00 418 438
AAA_14 AAA domain 0.00013 13 27.00 418 530
Sigma54_activ_2 Sigma-54 interaction domain 0.00017 12 25.00 418 491
PhoH PhoH-like protein 0.00015 12 20.10 418 444
AAA_2 AAA domain (Cdc48 subfamily) 1.3E-07 23 20.60 418 516
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.00054 10 20.00 418 441
AAA_lid_3 AAA+ lid domain 1.5E-13 41 27.20 580 617
AAA ATPase family associated with various cellular activities (AAA) 0.00073 11 20.80 708 809
Bromodomain Bromodomain 5.6E-13 40 21.00 906 976

1210

AAA_7
ABC_tran
AAA_16
TIP49
Sigma54_activat
IstB_IS21
Parvo_NS1
AAA_5
AAA_18
AAA_22
AAA
AAA_30
RNA_helicase
Mg_chelatase
AAA_25
AAA_33
AAA_14
Sigma54_activ_2
PhoH
AAA_2
RuvB_N
AAA_lid_3
AAA
Bromodomain

References:

IstB_IS21

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

AAA_lid_3

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

Bromodomain
1350857 The bromodomain: a conserved sequence found in human, Drosophila and yeast proteins. Nucleic Acids Res 1992;20:2603-2603.
9175470 The bromodomain revisited. Trends Biochem Sci 1997;22:151-153.
10365964 Structure and ligand of a histone acetyltransferase bromodomain. Nature 1999;399:491-496.

AAA_33

AAA_25

AAA_30

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Sigma54_activ_2

Parvo_NS1
8372437 Nuclear targeting of the parvoviral replicator molecule NS1: evidence for self-association prior to nuclear transport. Virology 1993;196:637-651.
9454701 Nonstructural protein-2 and the replication of canine parvovirus. Virology 1998;240:273-281.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
AAA_7	P-loop containing dynein motor region	0.00022	11	25.80	406	439
ABC_tran	ABC transporter	0.00039	12	23.10	410	497
AAA_16	AAA ATPase domain	2.9E-07	22	32.60	415	526
TIP49	TIP49 C-terminus	9E-06	16	23.80	416	465
Sigma54_activat	Sigma-54 interaction domain	0.00071	10	20.20	416	444
IstB_IS21	IstB-like ATP binding protein	6.2E-10	30	24.10	416	499
Parvo_NS1	Parvovirus non-structural protein NS1	0.00034	10	20.00	417	439
AAA_5	AAA domain (dynein-related subfamily)	2.2E-07	22	20.80	417	494
AAA_18	AAA domain	1.8E-06	19	29.40	418	467
AAA_22	AAA domain	0.00011	13	27.00	418	440
AAA	ATPase family associated with various cellular activities (AAA)	0	134	20.80	418	552
AAA_30	AAA domain	1.8E-05	15	27.00	418	487
RNA_helicase	RNA helicase	4.3E-05	15	21.50	418	475
Mg_chelatase	Magnesium chelatase, subunit ChlI	5.2E-05	13	20.30	418	438
AAA_25	AAA domain	9.1E-05	13	27.00	418	448
AAA_33	AAA domain	0.0001	13	27.00	418	438
AAA_14	AAA domain	0.00013	13	27.00	418	530
Sigma54_activ_2	Sigma-54 interaction domain	0.00017	12	25.00	418	491
PhoH	PhoH-like protein	0.00015	12	20.10	418	444
AAA_2	AAA domain (Cdc48 subfamily)	1.3E-07	23	20.60	418	516
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.00054	10	20.00	418	441
AAA_lid_3	AAA+ lid domain	1.5E-13	41	27.20	580	617
AAA	ATPase family associated with various cellular activities (AAA)	0.00073	11	20.80	708	809
Bromodomain	Bromodomain	5.6E-13	40	21.00	906	976