c2pfam

AT1G62020.1 :

Domain Description Evalue Bits GA Start End
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0038 7 22.90 7 58
WD40 WD domain, G-beta repeat 0.00051 10 21.00 10 37
WD40 WD domain, G-beta repeat 3.2E-08 23 21.00 45 79
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.11 2 22.90 49 88
Nup160 Nucleoporin Nup120/160 0.07 1 19.20 72 88
WD40 WD domain, G-beta repeat 1.9E-11 34 21.00 84 121
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.026 4 22.90 95 142
Nup160 Nucleoporin Nup120/160 0.012 3 19.20 105 130
WD40 WD domain, G-beta repeat 5.6E-11 32 21.00 126 163
Nup160 Nucleoporin Nup120/160 0.0023 5 19.20 143 164
WD40 WD domain, G-beta repeat 2.1E-07 21 21.00 198 231
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 2.8E-08 23 22.90 211 291
WD40 WD domain, G-beta repeat 6E-08 22 21.00 241 276
Nup160 Nucleoporin Nup120/160 0.022 2 19.20 250 284
WD40 WD domain, G-beta repeat 0.08 3 21.00 284 313
Nup160 Nucleoporin Nup120/160 0.33 -2 19.20 337 408
Coatomer_WDAD Coatomer WD associated region 0 441 25.10 341 768
COPI_C Coatomer (COPI) alpha subunit C-terminus 0 572 19.70 815 1216
TPR_14 Tetratricopeptide repeat 0.016 5 23.50 920 941
TPR_14 Tetratricopeptide repeat 0.023 5 23.50 1096 1130
Fis1_TPR_C Fis1 C-terminal tetratricopeptide repeat 7.9E-06 15 25.30 1104 1138

1216

ANAPC4_WD40
WD40
WD40
ANAPC4_WD40
Nup160
WD40
ANAPC4_WD40
Nup160
WD40
Nup160
WD40
ANAPC4_WD40
WD40
Nup160
WD40
Nup160
Coatomer_WDAD
COPI_C
TPR_14
TPR_14
Fis1_TPR_C

References:

ANAPC4_WD40

Nup160
8557736 Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport. J Cell Biol. 1995;131:1659-1675.
11684705 Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. J Cell Biol 2001;155:339-354.
17360435 Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc Natl Acad Sci U S A. 2007;104:3811-3816.

COPI_C
9261053 Coatomer (COPI)-coated vesicles: role in intracellular transport and protein sorting. Curr Opin Cell Biol 1997;9:484-487.

Coatomer_WDAD

Fis1_TPR_C

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

TPR_14

Domain	Description	Evalue	Bits	GA	Start	End
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0038	7	22.90	7	58
WD40	WD domain, G-beta repeat	0.00051	10	21.00	10	37
WD40	WD domain, G-beta repeat	3.2E-08	23	21.00	45	79
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.11	2	22.90	49	88
Nup160	Nucleoporin Nup120/160	0.07	1	19.20	72	88
WD40	WD domain, G-beta repeat	1.9E-11	34	21.00	84	121
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.026	4	22.90	95	142
Nup160	Nucleoporin Nup120/160	0.012	3	19.20	105	130
WD40	WD domain, G-beta repeat	5.6E-11	32	21.00	126	163
Nup160	Nucleoporin Nup120/160	0.0023	5	19.20	143	164
WD40	WD domain, G-beta repeat	2.1E-07	21	21.00	198	231
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	2.8E-08	23	22.90	211	291
WD40	WD domain, G-beta repeat	6E-08	22	21.00	241	276
Nup160	Nucleoporin Nup120/160	0.022	2	19.20	250	284
WD40	WD domain, G-beta repeat	0.08	3	21.00	284	313
Nup160	Nucleoporin Nup120/160	0.33	-2	19.20	337	408
Coatomer_WDAD	Coatomer WD associated region	0	441	25.10	341	768
COPI_C	Coatomer (COPI) alpha subunit C-terminus	0	572	19.70	815	1216
TPR_14	Tetratricopeptide repeat	0.016	5	23.50	920	941
TPR_14	Tetratricopeptide repeat	0.023	5	23.50	1096	1130
Fis1_TPR_C	Fis1 C-terminal tetratricopeptide repeat	7.9E-06	15	25.30	1104	1138