c2pfam

AT1G62130.1 :

Domain Description Evalue Bits GA Start End
Sigma54_activ_2 Sigma-54 interaction domain 0.61 1 25.00 356 391
AAA_16 AAA ATPase domain 0.68 1 32.60 532 594
AAA ATPase family associated with various cellular activities (AAA) 0.062 5 20.80 542 611
AAA_14 AAA domain 0.75 1 27.00 741 770
IstB_IS21 IstB-like ATP binding protein 6.9E-06 17 24.10 783 813
DUF815 Protein of unknown function (DUF815) 5.6E-05 13 20.10 786 852
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00047 11 26.60 786 814
AAA_16 AAA ATPase domain 1.4E-05 16 32.60 787 815
RuvB_N Holliday junction DNA helicase ruvB N-terminus 1.5E-06 19 20.00 787 855
Bac_DnaA Bacterial dnaA protein 0.00018 12 20.40 788 910
TIP49 TIP49 C-terminus 8.1E-05 13 23.80 789 826
AAA_7 P-loop containing dynein motor region 0.00047 11 25.80 789 813
AAA_22 AAA domain 9.5E-06 17 27.00 789 812
AAA_2 AAA domain (Cdc48 subfamily) 8.3E-05 14 20.60 790 855
Sigma54_activat Sigma-54 interaction domain 0.001 10 20.20 790 810
Mg_chelatase Magnesium chelatase, subunit ChlI 0.00013 12 20.30 791 809
Sigma54_activ_2 Sigma-54 interaction domain 0.0035 8 25.00 791 855
AAA_24 AAA domain 0.00053 11 27.00 791 808
RNA_helicase RNA helicase 0.00047 11 21.50 791 816
Rad17 Rad17 cell cycle checkpoint protein 0.00074 10 19.70 791 870
NACHT NACHT domain 0.00053 11 20.40 791 814
AAA_33 AAA domain 4.7E-05 14 27.00 791 821
AAA_18 AAA domain 0.00014 13 29.40 791 817
AAA_14 AAA domain 0.00033 12 27.00 791 855
AAA ATPase family associated with various cellular activities (AAA) 3.9E-29 93 20.80 791 908
AAA_5 AAA domain (dynein-related subfamily) 4.3E-05 14 20.80 791 827
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.54 1 27.00 792 807
PhoH PhoH-like protein 0.00039 11 20.10 792 812
Cytidylate_kin Cytidylate kinase 0.00042 11 20.40 793 820
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00018 12 27.00 823 857
Sigma54_activat Sigma-54 interaction domain 0.27 2 20.20 843 890
AAA_lid_3 AAA+ lid domain 5.6E-11 33 27.20 932 967

1043

Sigma54_activ_2
AAA_16
AAA
AAA_14
IstB_IS21
DUF815
TsaE
AAA_16
RuvB_N
Bac_DnaA
TIP49
AAA_7
AAA_22
AAA_2
Sigma54_activat
Mg_chelatase
Sigma54_activ_2
AAA_24
RNA_helicase
Rad17
NACHT
AAA_33
AAA_18
AAA_14
AAA
AAA_5
AAA_21
PhoH
Cytidylate_kin
AAA_21
Sigma54_activat
AAA_lid_3

References:

IstB_IS21

AAA_16

AAA_14

AAA_33

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

TsaE

AAA_lid_3

DUF815

Cytidylate_kin
9862805 Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure 1998;6:1517-1527.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_7

Bac_DnaA

AAA_24

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

Sigma54_activ_2

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

AAA_21

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
Sigma54_activ_2	Sigma-54 interaction domain	0.61	1	25.00	356	391
AAA_16	AAA ATPase domain	0.68	1	32.60	532	594
AAA	ATPase family associated with various cellular activities (AAA)	0.062	5	20.80	542	611
AAA_14	AAA domain	0.75	1	27.00	741	770
IstB_IS21	IstB-like ATP binding protein	6.9E-06	17	24.10	783	813
DUF815	Protein of unknown function (DUF815)	5.6E-05	13	20.10	786	852
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00047	11	26.60	786	814
AAA_16	AAA ATPase domain	1.4E-05	16	32.60	787	815
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	1.5E-06	19	20.00	787	855
Bac_DnaA	Bacterial dnaA protein	0.00018	12	20.40	788	910
TIP49	TIP49 C-terminus	8.1E-05	13	23.80	789	826
AAA_7	P-loop containing dynein motor region	0.00047	11	25.80	789	813
AAA_22	AAA domain	9.5E-06	17	27.00	789	812
AAA_2	AAA domain (Cdc48 subfamily)	8.3E-05	14	20.60	790	855
Sigma54_activat	Sigma-54 interaction domain	0.001	10	20.20	790	810
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.00013	12	20.30	791	809
Sigma54_activ_2	Sigma-54 interaction domain	0.0035	8	25.00	791	855
AAA_24	AAA domain	0.00053	11	27.00	791	808
RNA_helicase	RNA helicase	0.00047	11	21.50	791	816
Rad17	Rad17 cell cycle checkpoint protein	0.00074	10	19.70	791	870
NACHT	NACHT domain	0.00053	11	20.40	791	814
AAA_33	AAA domain	4.7E-05	14	27.00	791	821
AAA_18	AAA domain	0.00014	13	29.40	791	817
AAA_14	AAA domain	0.00033	12	27.00	791	855
AAA	ATPase family associated with various cellular activities (AAA)	3.9E-29	93	20.80	791	908
AAA_5	AAA domain (dynein-related subfamily)	4.3E-05	14	20.80	791	827
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.54	1	27.00	792	807
PhoH	PhoH-like protein	0.00039	11	20.10	792	812
Cytidylate_kin	Cytidylate kinase	0.00042	11	20.40	793	820
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00018	12	27.00	823	857
Sigma54_activat	Sigma-54 interaction domain	0.27	2	20.20	843	890
AAA_lid_3	AAA+ lid domain	5.6E-11	33	27.20	932	967