c2pfam

AT1G62260.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.75 -1 30.00 47 69
PPR PPR repeat 0.046 4 25.00 51 69
PPR_1 PPR repeat 0.91 -1 23.80 52 66
TPR_19 Tetratricopeptide repeat 0.015 5 25.00 54 101
PPR_2 PPR repeat family 1.3E-12 37 30.00 69 102
PPR_1 PPR repeat 4.6E-09 25 23.80 70 97
PPR_3 Pentatricopeptide repeat domain 0.0034 7 25.00 70 110
PPR PPR repeat 1.1E-10 31 25.00 72 101
PPR_1 PPR repeat 6.2E-08 22 23.80 100 131
PPR_2 PPR repeat family 1.4E-09 27 30.00 100 134
PPR_3 Pentatricopeptide repeat domain 0.13 2 25.00 100 118
PPR PPR repeat 8.7E-08 21 25.00 103 134
PPR_2 PPR repeat family 2.7E-10 30 30.00 135 166
PPR_1 PPR repeat 2.4E-09 26 23.80 135 162
PPR PPR repeat 4.8E-12 35 25.00 137 166
PPR_3 Pentatricopeptide repeat domain 0.44 0 25.00 138 164
TPR_19 Tetratricopeptide repeat 0.71 0 25.00 150 194
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.0048 6 27.20 152 222
PPR_1 PPR repeat 3E-12 35 23.80 165 193
PPR_2 PPR repeat family 1.5E-09 27 30.00 166 197
PPR_3 Pentatricopeptide repeat domain 0.31 0 25.00 166 193
PPR PPR repeat 1.6E-10 30 25.00 168 195
PPR PPR repeat 0.12 2 25.00 203 221
PPR_2 PPR repeat family 0.68 -1 30.00 203 217
PPR_2 PPR repeat family 1.5E-06 18 30.00 235 260
PPR_1 PPR repeat 1.3E-05 14 23.80 235 260
PPR_3 Pentatricopeptide repeat domain 0.13 2 25.00 235 258
PPR PPR repeat 3.7E-07 19 25.00 237 261
TPR_19 Tetratricopeptide repeat 0.3 1 25.00 245 263
PPR_1 PPR repeat 3.5E-07 19 23.80 279 308
PPR_2 PPR repeat family 8.4E-11 31 30.00 279 310
PPR_3 Pentatricopeptide repeat domain 0.00084 9 25.00 280 309
PPR PPR repeat 3.5E-10 29 25.00 282 310
TPR_1 Tetratricopeptide repeat 0.79 -1 20.40 283 298
TPR_19 Tetratricopeptide repeat 0.74 0 25.00 287 309
PPR_3 Pentatricopeptide repeat domain 0.32 0 25.00 311 338
PPR_2 PPR repeat family 2.5E-11 33 30.00 311 341
PPR_1 PPR repeat 6.4E-08 22 23.80 311 338
PPR PPR repeat 2.4E-10 29 25.00 313 341
PPR_1 PPR repeat 0.0025 7 23.80 342 362
PPR_2 PPR repeat family 0.00034 10 30.00 342 367
PPR PPR repeat 2.9E-06 17 25.00 345 368
PPR_3 Pentatricopeptide repeat domain 0.26 1 25.00 345 373
TPR_1 Tetratricopeptide repeat 0.39 0 20.40 353 368
PPR_2 PPR repeat family 1.3E-13 40 30.00 373 418
PPR_1 PPR repeat 0.00053 9 23.80 374 400
PPR PPR repeat 2.4E-09 26 25.00 375 401
PPR_3 Pentatricopeptide repeat domain 0.00028 10 25.00 375 418
TPR_1 Tetratricopeptide repeat 8.2E-05 12 20.40 376 397
PPR_long Pentacotripeptide-repeat region of PRORP 0.053 2 27.00 378 420
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.095 2 27.20 383 401
PPR_3 Pentatricopeptide repeat domain 0.0015 8 25.00 434 472
PPR_1 PPR repeat 1.3E-06 17 23.80 439 470
PPR_2 PPR repeat family 7.5E-06 15 30.00 441 471
PPR PPR repeat 4.7E-07 19 25.00 446 471
PPR_1 PPR repeat 5.6E-07 19 23.80 472 502
PPR_3 Pentatricopeptide repeat domain 2.7E-10 29 25.00 472 520
PPR_2 PPR repeat family 4.2E-16 48 30.00 475 521
PPR PPR repeat 8.2E-12 34 25.00 476 506
PPR_long Pentacotripeptide-repeat region of PRORP 3.1E-08 22 27.00 490 572
PPR_1 PPR repeat 0.00018 11 23.80 504 536
PPR PPR repeat 3.3E-05 13 25.00 511 537
PPR_3 Pentatricopeptide repeat domain 0.077 2 25.00 541 572
PPR PPR repeat 0.014 5 25.00 548 572
PPR_2 PPR repeat family 0.16 1 30.00 549 576
TPR_19 Tetratricopeptide repeat 0.34 1 25.00 553 571
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.49 0 27.20 559 572
PPR_3 Pentatricopeptide repeat domain 0.27 1 25.00 583 621
TPR_19 Tetratricopeptide repeat 0.015 5 25.00 598 633
PPR_3 Pentatricopeptide repeat domain 0.32 0 25.00 618 644
TPR_1 Tetratricopeptide repeat 1 -1 20.40 620 631
PPR_2 PPR repeat family 0.059 3 30.00 620 643
PPR PPR repeat 0.012 5 25.00 620 642
PPR_1 PPR repeat 0.71 -1 23.80 624 638

656

PPR_2
PPR
PPR_1
TPR_19
PPR_2
PPR_1
PPR_3
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR_2
PPR_1
PPR
PPR_3
TPR_19
ANAPC3
PPR_1
PPR_2
PPR_3
PPR
PPR
PPR_2
PPR_2
PPR_1
PPR_3
PPR
TPR_19
PPR_1
PPR_2
PPR_3
PPR
TPR_1
TPR_19
PPR_3
PPR_2
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
TPR_1
PPR_2
PPR_1
PPR
PPR_3
TPR_1
PPR_long
ANAPC3
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR_3
PPR
PPR_2
TPR_19
ANAPC3
PPR_3
TPR_19
PPR_3
TPR_1
PPR_2
PPR
PPR_1

References:

ANAPC3

TPR_19

PPR_long

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.75	-1	30.00	47	69
PPR	PPR repeat	0.046	4	25.00	51	69
PPR_1	PPR repeat	0.91	-1	23.80	52	66
TPR_19	Tetratricopeptide repeat	0.015	5	25.00	54	101
PPR_2	PPR repeat family	1.3E-12	37	30.00	69	102
PPR_1	PPR repeat	4.6E-09	25	23.80	70	97
PPR_3	Pentatricopeptide repeat domain	0.0034	7	25.00	70	110
PPR	PPR repeat	1.1E-10	31	25.00	72	101
PPR_1	PPR repeat	6.2E-08	22	23.80	100	131
PPR_2	PPR repeat family	1.4E-09	27	30.00	100	134
PPR_3	Pentatricopeptide repeat domain	0.13	2	25.00	100	118
PPR	PPR repeat	8.7E-08	21	25.00	103	134
PPR_2	PPR repeat family	2.7E-10	30	30.00	135	166
PPR_1	PPR repeat	2.4E-09	26	23.80	135	162
PPR	PPR repeat	4.8E-12	35	25.00	137	166
PPR_3	Pentatricopeptide repeat domain	0.44	0	25.00	138	164
TPR_19	Tetratricopeptide repeat	0.71	0	25.00	150	194
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.0048	6	27.20	152	222
PPR_1	PPR repeat	3E-12	35	23.80	165	193
PPR_2	PPR repeat family	1.5E-09	27	30.00	166	197
PPR_3	Pentatricopeptide repeat domain	0.31	0	25.00	166	193
PPR	PPR repeat	1.6E-10	30	25.00	168	195
PPR	PPR repeat	0.12	2	25.00	203	221
PPR_2	PPR repeat family	0.68	-1	30.00	203	217
PPR_2	PPR repeat family	1.5E-06	18	30.00	235	260
PPR_1	PPR repeat	1.3E-05	14	23.80	235	260
PPR_3	Pentatricopeptide repeat domain	0.13	2	25.00	235	258
PPR	PPR repeat	3.7E-07	19	25.00	237	261
TPR_19	Tetratricopeptide repeat	0.3	1	25.00	245	263
PPR_1	PPR repeat	3.5E-07	19	23.80	279	308
PPR_2	PPR repeat family	8.4E-11	31	30.00	279	310
PPR_3	Pentatricopeptide repeat domain	0.00084	9	25.00	280	309
PPR	PPR repeat	3.5E-10	29	25.00	282	310
TPR_1	Tetratricopeptide repeat	0.79	-1	20.40	283	298
TPR_19	Tetratricopeptide repeat	0.74	0	25.00	287	309
PPR_3	Pentatricopeptide repeat domain	0.32	0	25.00	311	338
PPR_2	PPR repeat family	2.5E-11	33	30.00	311	341
PPR_1	PPR repeat	6.4E-08	22	23.80	311	338
PPR	PPR repeat	2.4E-10	29	25.00	313	341
PPR_1	PPR repeat	0.0025	7	23.80	342	362
PPR_2	PPR repeat family	0.00034	10	30.00	342	367
PPR	PPR repeat	2.9E-06	17	25.00	345	368
PPR_3	Pentatricopeptide repeat domain	0.26	1	25.00	345	373
TPR_1	Tetratricopeptide repeat	0.39	0	20.40	353	368
PPR_2	PPR repeat family	1.3E-13	40	30.00	373	418
PPR_1	PPR repeat	0.00053	9	23.80	374	400
PPR	PPR repeat	2.4E-09	26	25.00	375	401
PPR_3	Pentatricopeptide repeat domain	0.00028	10	25.00	375	418
TPR_1	Tetratricopeptide repeat	8.2E-05	12	20.40	376	397
PPR_long	Pentacotripeptide-repeat region of PRORP	0.053	2	27.00	378	420
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.095	2	27.20	383	401
PPR_3	Pentatricopeptide repeat domain	0.0015	8	25.00	434	472
PPR_1	PPR repeat	1.3E-06	17	23.80	439	470
PPR_2	PPR repeat family	7.5E-06	15	30.00	441	471
PPR	PPR repeat	4.7E-07	19	25.00	446	471
PPR_1	PPR repeat	5.6E-07	19	23.80	472	502
PPR_3	Pentatricopeptide repeat domain	2.7E-10	29	25.00	472	520
PPR_2	PPR repeat family	4.2E-16	48	30.00	475	521
PPR	PPR repeat	8.2E-12	34	25.00	476	506
PPR_long	Pentacotripeptide-repeat region of PRORP	3.1E-08	22	27.00	490	572
PPR_1	PPR repeat	0.00018	11	23.80	504	536
PPR	PPR repeat	3.3E-05	13	25.00	511	537
PPR_3	Pentatricopeptide repeat domain	0.077	2	25.00	541	572
PPR	PPR repeat	0.014	5	25.00	548	572
PPR_2	PPR repeat family	0.16	1	30.00	549	576
TPR_19	Tetratricopeptide repeat	0.34	1	25.00	553	571
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.49	0	27.20	559	572
PPR_3	Pentatricopeptide repeat domain	0.27	1	25.00	583	621
TPR_19	Tetratricopeptide repeat	0.015	5	25.00	598	633
PPR_3	Pentatricopeptide repeat domain	0.32	0	25.00	618	644
TPR_1	Tetratricopeptide repeat	1	-1	20.40	620	631
PPR_2	PPR repeat family	0.059	3	30.00	620	643
PPR	PPR repeat	0.012	5	25.00	620	642
PPR_1	PPR repeat	0.71	-1	23.80	624	638