c2pfam

AT1G62590.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.001 10 25.00 52 97
PPR_2 PPR repeat family 1 0 30.00 62 83
PPR PPR repeat 0.29 2 25.00 65 79
PPR_1 PPR repeat 0.34 1 23.80 65 77
PPR_long Pentacotripeptide-repeat region of PRORP 0.00016 11 27.00 65 162
PPR_2 PPR repeat family 4.2E-09 27 30.00 83 132
PPR PPR repeat 0.03 5 25.00 88 114
MNE1 Mitochondrial splicing apparatus component 0.043 4 22.70 88 115
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.034 5 26.10 93 134
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.18 1 21.90 102 134
RabGAP-TBC Rab-GTPase-TBC domain 0.032 4 24.50 107 144
PPR_3 Pentatricopeptide repeat domain 3.2E-08 24 25.00 107 165
PPR_1 PPR repeat 9.1E-09 26 23.80 121 146
PPR PPR repeat 1.3E-08 25 25.00 121 150
PPR_2 PPR repeat family 8.5E-15 45 30.00 121 167
RabGAP-TBC Rab-GTPase-TBC domain 0.54 0 24.50 144 189
PPR_1 PPR repeat 1.2E-09 28 23.80 150 182
ATP13 Mitochondrial ATPase expression 0.0039 8 26.70 152 183
PPR_2 PPR repeat family 1.1E-13 42 30.00 155 200
PPR PPR repeat 2.1E-07 21 25.00 156 185
AEP1 ATPase expression protein 1 0.92 -1 27.00 156 190
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.027 4 25.90 160 220
DUF3863 Domain of Unknown Function with PDB structure (DUF3863) 0.0013 8 27.00 169 192
PPR_long Pentacotripeptide-repeat region of PRORP 2.6E-09 27 27.00 171 257
PPR_3 Pentatricopeptide repeat domain 8.8E-13 39 25.00 177 233
DUF1421 Protein of unknown function (DUF1421) 0.0021 8 20.00 177 192
PPR_1 PPR repeat 2.6E-11 34 23.80 184 217
ATP13 Mitochondrial ATPase expression 0.032 5 26.70 187 218
PPR_2 PPR repeat family 1.1E-17 55 30.00 188 237
PPR PPR repeat 1E-07 23 25.00 191 221
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.51 1 26.10 204 238
DUF3863 Domain of Unknown Function with PDB structure (DUF3863) 0.44 0 27.00 205 230
PPR_1 PPR repeat 5.5E-14 42 23.80 219 252
PPR PPR repeat 5.4E-08 23 25.00 226 253
PPR_2 PPR repeat family 1.8E-05 15 30.00 231 260
Clathrin Region in Clathrin and VPS 0.031 5 23.60 231 286
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.0021 8 21.90 236 275
PPR_3 Pentatricopeptide repeat domain 0.00025 12 25.00 236 268
AEP1 ATPase expression protein 1 0.071 2 27.00 243 329
PPR_3 Pentatricopeptide repeat domain 3.3E-14 43 25.00 247 304
PPR_long Pentacotripeptide-repeat region of PRORP 3.1E-07 20 27.00 247 314
MNE1 Mitochondrial splicing apparatus component 0.28 2 22.70 250 289
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.69 1 26.10 256 278
PPR_1 PPR repeat 1.1E-12 38 23.80 256 287
MRP-S27 Mitochondrial 28S ribosomal protein S27 2.6E-06 17 25.90 259 352
PPR_2 PPR repeat family 6.9E-21 65 30.00 259 307
PPR PPR repeat 3.5E-10 30 25.00 261 291
ATP13 Mitochondrial ATPase expression 0.49 1 26.70 262 282
PPR_long Pentacotripeptide-repeat region of PRORP 2.1E-12 37 27.00 267 408
Toxin_YhaV Toxin with endonuclease activity YhaV 0.76 0 22.80 269 294
DED Death effector domain 0.25 2 22.00 272 290
Mtf2 Mtf2 family 0.041 4 27.00 273 298
PPR_3 Pentatricopeptide repeat domain 2.5E-18 57 25.00 282 342
PPR_1 PPR repeat 1.2E-13 41 23.80 289 321
PPR_2 PPR repeat family 1.3E-15 48 30.00 293 339
APAF1_C APAF-1 helical domain 0.21 2 22.80 295 349
PPR PPR repeat 3.4E-09 27 25.00 296 326
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.61 -1 21.90 318 346
RabGAP-TBC Rab-GTPase-TBC domain 0.0066 7 24.50 320 395
ATP13 Mitochondrial ATPase expression 0.28 2 26.70 325 358
PPR_1 PPR repeat 9.2E-11 32 23.80 326 356
PPR_2 PPR repeat family 3.4E-21 66 30.00 328 376
PPR PPR repeat 2.8E-11 34 25.00 331 360
AEP1 ATPase expression protein 1 0.013 5 27.00 331 376
TPR_14 Tetratricopeptide repeat 0.033 6 23.50 335 360
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.043 5 26.10 342 373
PPR_3 Pentatricopeptide repeat domain 8.9E-12 36 25.00 351 410
PPR_1 PPR repeat 4.1E-14 43 23.80 360 392
PPR_2 PPR repeat family 1.9E-19 60 30.00 363 412
PPR PPR repeat 4.1E-10 30 25.00 366 396
AEP1 ATPase expression protein 1 0.064 3 27.00 367 411
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.086 2 25.90 370 432
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.45 0 21.90 385 414
PPR_1 PPR repeat 2.5E-17 53 23.80 394 427
PPR_2 PPR repeat family 7.4E-20 62 30.00 398 446
PPR PPR repeat 2E-11 34 25.00 401 431
DED Death effector domain 0.029 5 22.00 411 434
PPR_long Pentacotripeptide-repeat region of PRORP 3.6E-15 46 27.00 412 520
Mtf2 Mtf2 family 0.46 1 27.00 421 438
PPR_3 Pentatricopeptide repeat domain 9.3E-14 42 25.00 422 478
PPR_1 PPR repeat 3.3E-11 33 23.80 429 462
ATP13 Mitochondrial ATPase expression 0.008 7 26.70 430 499
PPR_2 PPR repeat family 9.2E-20 61 30.00 434 482
PPR PPR repeat 5.9E-10 30 25.00 436 466
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00019 11 25.90 437 495
TPR_14 Tetratricopeptide repeat 0.37 3 23.50 438 464
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.18 3 26.10 442 489
Toxin_YhaV Toxin with endonuclease activity YhaV 0.003 8 22.80 448 470
RabGAP-TBC Rab-GTPase-TBC domain 0.056 3 24.50 453 503
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.34 0 21.90 456 478
PPR_3 Pentatricopeptide repeat domain 3.1E-10 31 25.00 460 502
PPR_1 PPR repeat 1.7E-15 47 23.80 464 497
PPR PPR repeat 1.2E-10 32 25.00 472 500
MNE1 Mitochondrial splicing apparatus component 0.012 6 22.70 472 514
PPR_2 PPR repeat family 3E-14 44 30.00 476 517
PPR_long Pentacotripeptide-repeat region of PRORP 6.2E-11 32 27.00 488 601
PPR_3 Pentatricopeptide repeat domain 3.9E-12 37 25.00 492 548
PPR_1 PPR repeat 1.2E-10 32 23.80 501 528
APAF1_C APAF-1 helical domain 0.006 7 22.80 502 552
PPR_2 PPR repeat family 5.2E-19 59 30.00 504 552
PPR PPR repeat 8.3E-08 23 25.00 507 535
PPR_3 Pentatricopeptide repeat domain 5.1E-12 36 25.00 532 584
PPR_1 PPR repeat 1.1E-16 51 23.80 534 567
PPR_2 PPR repeat family 7.6E-19 58 30.00 538 585
PPR PPR repeat 6.1E-12 36 25.00 541 570
Clathrin Region in Clathrin and VPS 0.31 1 23.60 546 569
Toxin_YhaV Toxin with endonuclease activity YhaV 1 0 22.80 557 575
PPR_3 Pentatricopeptide repeat domain 2.9E-05 15 25.00 562 602
PPR_1 PPR repeat 5.5E-05 13 23.80 570 602
PPR_2 PPR repeat family 2.1E-06 18 30.00 573 613
Mtf2 Mtf2 family 0.0051 7 27.00 576 622
PPR PPR repeat 1.2E-05 16 25.00 577 605
TPR_14 Tetratricopeptide repeat 0.79 2 23.50 580 601

634

PPR_3
PPR_2
PPR
PPR_1
PPR_long
PPR_2
PPR
MNE1
RPM2
ECSIT
RabGAP-TBC
PPR_3
PPR_1
PPR
PPR_2
RabGAP-TBC
PPR_1
ATP13
PPR_2
PPR
AEP1
MRP-S27
DUF3863
PPR_long
PPR_3
DUF1421
PPR_1
ATP13
PPR_2
PPR
RPM2
DUF3863
PPR_1
PPR
PPR_2
Clathrin
ECSIT
PPR_3
AEP1
PPR_3
PPR_long
MNE1
RPM2
PPR_1
MRP-S27
PPR_2
PPR
ATP13
PPR_long
Toxin_YhaV
DED
Mtf2
PPR_3
PPR_1
PPR_2
APAF1_C
PPR
ECSIT
RabGAP-TBC
ATP13
PPR_1
PPR_2
PPR
AEP1
TPR_14
RPM2
PPR_3
PPR_1
PPR_2
PPR
AEP1
MRP-S27
ECSIT
PPR_1
PPR_2
PPR
DED
PPR_long
Mtf2
PPR_3
PPR_1
ATP13
PPR_2
PPR
MRP-S27
TPR_14
RPM2
Toxin_YhaV
RabGAP-TBC
ECSIT
PPR_3
PPR_1
PPR
MNE1
PPR_2
PPR_long
PPR_3
PPR_1
APAF1_C
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
Clathrin
Toxin_YhaV
PPR_3
PPR_1
PPR_2
Mtf2
PPR
TPR_14

References:

AEP1

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

DUF3863

APAF1_C

Toxin_YhaV
17706670 prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli. J Mol Biol. 2007;372:894-905.

ATP13

MNE1

Mtf2

RabGAP-TBC

DED
9582077 NMR structure and mutagenesis of the FADD (Mort1) death-effector domain. Nature 1998;392:941-945.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

DUF1421

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.001	10	25.00	52	97
PPR_2	PPR repeat family	1	0	30.00	62	83
PPR	PPR repeat	0.29	2	25.00	65	79
PPR_1	PPR repeat	0.34	1	23.80	65	77
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00016	11	27.00	65	162
PPR_2	PPR repeat family	4.2E-09	27	30.00	83	132
PPR	PPR repeat	0.03	5	25.00	88	114
MNE1	Mitochondrial splicing apparatus component	0.043	4	22.70	88	115
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.034	5	26.10	93	134
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.18	1	21.90	102	134
RabGAP-TBC	Rab-GTPase-TBC domain	0.032	4	24.50	107	144
PPR_3	Pentatricopeptide repeat domain	3.2E-08	24	25.00	107	165
PPR_1	PPR repeat	9.1E-09	26	23.80	121	146
PPR	PPR repeat	1.3E-08	25	25.00	121	150
PPR_2	PPR repeat family	8.5E-15	45	30.00	121	167
RabGAP-TBC	Rab-GTPase-TBC domain	0.54	0	24.50	144	189
PPR_1	PPR repeat	1.2E-09	28	23.80	150	182
ATP13	Mitochondrial ATPase expression	0.0039	8	26.70	152	183
PPR_2	PPR repeat family	1.1E-13	42	30.00	155	200
PPR	PPR repeat	2.1E-07	21	25.00	156	185
AEP1	ATPase expression protein 1	0.92	-1	27.00	156	190
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.027	4	25.90	160	220
DUF3863	Domain of Unknown Function with PDB structure (DUF3863)	0.0013	8	27.00	169	192
PPR_long	Pentacotripeptide-repeat region of PRORP	2.6E-09	27	27.00	171	257
PPR_3	Pentatricopeptide repeat domain	8.8E-13	39	25.00	177	233
DUF1421	Protein of unknown function (DUF1421)	0.0021	8	20.00	177	192
PPR_1	PPR repeat	2.6E-11	34	23.80	184	217
ATP13	Mitochondrial ATPase expression	0.032	5	26.70	187	218
PPR_2	PPR repeat family	1.1E-17	55	30.00	188	237
PPR	PPR repeat	1E-07	23	25.00	191	221
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.51	1	26.10	204	238
DUF3863	Domain of Unknown Function with PDB structure (DUF3863)	0.44	0	27.00	205	230
PPR_1	PPR repeat	5.5E-14	42	23.80	219	252
PPR	PPR repeat	5.4E-08	23	25.00	226	253
PPR_2	PPR repeat family	1.8E-05	15	30.00	231	260
Clathrin	Region in Clathrin and VPS	0.031	5	23.60	231	286
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.0021	8	21.90	236	275
PPR_3	Pentatricopeptide repeat domain	0.00025	12	25.00	236	268
AEP1	ATPase expression protein 1	0.071	2	27.00	243	329
PPR_3	Pentatricopeptide repeat domain	3.3E-14	43	25.00	247	304
PPR_long	Pentacotripeptide-repeat region of PRORP	3.1E-07	20	27.00	247	314
MNE1	Mitochondrial splicing apparatus component	0.28	2	22.70	250	289
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.69	1	26.10	256	278
PPR_1	PPR repeat	1.1E-12	38	23.80	256	287
MRP-S27	Mitochondrial 28S ribosomal protein S27	2.6E-06	17	25.90	259	352
PPR_2	PPR repeat family	6.9E-21	65	30.00	259	307
PPR	PPR repeat	3.5E-10	30	25.00	261	291
ATP13	Mitochondrial ATPase expression	0.49	1	26.70	262	282
PPR_long	Pentacotripeptide-repeat region of PRORP	2.1E-12	37	27.00	267	408
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.76	0	22.80	269	294
DED	Death effector domain	0.25	2	22.00	272	290
Mtf2	Mtf2 family	0.041	4	27.00	273	298
PPR_3	Pentatricopeptide repeat domain	2.5E-18	57	25.00	282	342
PPR_1	PPR repeat	1.2E-13	41	23.80	289	321
PPR_2	PPR repeat family	1.3E-15	48	30.00	293	339
APAF1_C	APAF-1 helical domain	0.21	2	22.80	295	349
PPR	PPR repeat	3.4E-09	27	25.00	296	326
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.61	-1	21.90	318	346
RabGAP-TBC	Rab-GTPase-TBC domain	0.0066	7	24.50	320	395
ATP13	Mitochondrial ATPase expression	0.28	2	26.70	325	358
PPR_1	PPR repeat	9.2E-11	32	23.80	326	356
PPR_2	PPR repeat family	3.4E-21	66	30.00	328	376
PPR	PPR repeat	2.8E-11	34	25.00	331	360
AEP1	ATPase expression protein 1	0.013	5	27.00	331	376
TPR_14	Tetratricopeptide repeat	0.033	6	23.50	335	360
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.043	5	26.10	342	373
PPR_3	Pentatricopeptide repeat domain	8.9E-12	36	25.00	351	410
PPR_1	PPR repeat	4.1E-14	43	23.80	360	392
PPR_2	PPR repeat family	1.9E-19	60	30.00	363	412
PPR	PPR repeat	4.1E-10	30	25.00	366	396
AEP1	ATPase expression protein 1	0.064	3	27.00	367	411
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.086	2	25.90	370	432
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.45	0	21.90	385	414
PPR_1	PPR repeat	2.5E-17	53	23.80	394	427
PPR_2	PPR repeat family	7.4E-20	62	30.00	398	446
PPR	PPR repeat	2E-11	34	25.00	401	431
DED	Death effector domain	0.029	5	22.00	411	434
PPR_long	Pentacotripeptide-repeat region of PRORP	3.6E-15	46	27.00	412	520
Mtf2	Mtf2 family	0.46	1	27.00	421	438
PPR_3	Pentatricopeptide repeat domain	9.3E-14	42	25.00	422	478
PPR_1	PPR repeat	3.3E-11	33	23.80	429	462
ATP13	Mitochondrial ATPase expression	0.008	7	26.70	430	499
PPR_2	PPR repeat family	9.2E-20	61	30.00	434	482
PPR	PPR repeat	5.9E-10	30	25.00	436	466
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00019	11	25.90	437	495
TPR_14	Tetratricopeptide repeat	0.37	3	23.50	438	464
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.18	3	26.10	442	489
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.003	8	22.80	448	470
RabGAP-TBC	Rab-GTPase-TBC domain	0.056	3	24.50	453	503
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.34	0	21.90	456	478
PPR_3	Pentatricopeptide repeat domain	3.1E-10	31	25.00	460	502
PPR_1	PPR repeat	1.7E-15	47	23.80	464	497
PPR	PPR repeat	1.2E-10	32	25.00	472	500
MNE1	Mitochondrial splicing apparatus component	0.012	6	22.70	472	514
PPR_2	PPR repeat family	3E-14	44	30.00	476	517
PPR_long	Pentacotripeptide-repeat region of PRORP	6.2E-11	32	27.00	488	601
PPR_3	Pentatricopeptide repeat domain	3.9E-12	37	25.00	492	548
PPR_1	PPR repeat	1.2E-10	32	23.80	501	528
APAF1_C	APAF-1 helical domain	0.006	7	22.80	502	552
PPR_2	PPR repeat family	5.2E-19	59	30.00	504	552
PPR	PPR repeat	8.3E-08	23	25.00	507	535
PPR_3	Pentatricopeptide repeat domain	5.1E-12	36	25.00	532	584
PPR_1	PPR repeat	1.1E-16	51	23.80	534	567
PPR_2	PPR repeat family	7.6E-19	58	30.00	538	585
PPR	PPR repeat	6.1E-12	36	25.00	541	570
Clathrin	Region in Clathrin and VPS	0.31	1	23.60	546	569
Toxin_YhaV	Toxin with endonuclease activity YhaV	1	0	22.80	557	575
PPR_3	Pentatricopeptide repeat domain	2.9E-05	15	25.00	562	602
PPR_1	PPR repeat	5.5E-05	13	23.80	570	602
PPR_2	PPR repeat family	2.1E-06	18	30.00	573	613
Mtf2	Mtf2 family	0.0051	7	27.00	576	622
PPR	PPR repeat	1.2E-05	16	25.00	577	605
TPR_14	Tetratricopeptide repeat	0.79	2	23.50	580	601