c2pfam

AT1G62780.1 :

Domain Description Evalue Bits GA Start End
Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1 0.00026 10 32.20 51 94
Macoilin Transmembrane protein 7.7E-05 10 32.00 51 176
Nop25 Nucleolar protein 12 (25kDa) 7.3E-05 12 22.40 52 83
Suppressor_APC Adenomatous polyposis coli tumour suppressor protein 7.3E-05 12 21.30 55 105
FliG_M FliG middle domain 1.3E-05 14 25.00 68 113
Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1 0.0039 6 32.20 102 126
FliG_M FliG middle domain 0.8 -1 25.00 137 160
Suppressor_APC Adenomatous polyposis coli tumour suppressor protein 0.069 2 21.30 143 165
Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1 0.041 3 32.20 146 173
Nop25 Nucleolar protein 12 (25kDa) 0.76 -1 22.40 156 167
CTK3 CTD kinase subunit gamma CTK3 4.2E-06 16 33.70 179 235

237

Lzipper-MIP1
Macoilin
Nop25
Suppressor_APC
FliG_M
Lzipper-MIP1
FliG_M
Suppressor_APC
Lzipper-MIP1
Nop25
CTK3

References:

Macoilin
17341690 An improved method for the analysis of membrane proteins by mass spectrometry. Physiol Genomics. 2007; [Epub ahead of print]

Suppressor_APC
12070164 The coiled coil region (amino acids 129-250) of the tumor suppressor protein adenomatous polyposis coli (APC). Its structure and its interaction with chromosome maintenance region 1 (Crm-1). J Biol Chem. 2002;277:32332-32338.

FliG_M

Nop25
16430885 Molecular cloning and characterization of Nop25, a novel nucleolar RNA binding protein, highly conserved in vertebrate species. Exp Cell Res. 2006;312:1031-1041.

Lzipper-MIP1

CTK3
11118453 Activation of the cyclin-dependent kinase CTDK-I requires the heterodimerization of two unstable subunits. J Biol Chem. 2001;276:8005-8013.
16721054 Bur1/Bur2 and the Ctk complex in yeast: the split personality of mammalian P-TEFb. Cell Cycle. 2006;5:1066-1068.

Domain	Description	Evalue	Bits	GA	Start	End
Lzipper-MIP1	Leucine-zipper of ternary complex factor MIP1	0.00026	10	32.20	51	94
Macoilin	Transmembrane protein	7.7E-05	10	32.00	51	176
Nop25	Nucleolar protein 12 (25kDa)	7.3E-05	12	22.40	52	83
Suppressor_APC	Adenomatous polyposis coli tumour suppressor protein	7.3E-05	12	21.30	55	105
FliG_M	FliG middle domain	1.3E-05	14	25.00	68	113
Lzipper-MIP1	Leucine-zipper of ternary complex factor MIP1	0.0039	6	32.20	102	126
FliG_M	FliG middle domain	0.8	-1	25.00	137	160
Suppressor_APC	Adenomatous polyposis coli tumour suppressor protein	0.069	2	21.30	143	165
Lzipper-MIP1	Leucine-zipper of ternary complex factor MIP1	0.041	3	32.20	146	173
Nop25	Nucleolar protein 12 (25kDa)	0.76	-1	22.40	156	167
CTK3	CTD kinase subunit gamma CTK3	4.2E-06	16	33.70	179	235