c2pfam

AT1G62930.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 1.8E-06 18 27.00 59 158
PPR_1 PPR repeat 0.0063 7 23.80 60 72
PPR_3 Pentatricopeptide repeat domain 0.00046 10 25.00 60 92
PPR_2 PPR repeat family 0.034 5 30.00 60 78
PPR PPR repeat 0.0085 7 25.00 60 74
PPR_2 PPR repeat family 4.6E-10 30 30.00 78 127
PPR PPR repeat 0.023 5 25.00 83 109
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.044 3 21.90 91 129
RabGAP-TBC Rab-GTPase-TBC domain 0.015 5 24.50 102 137
PPR_3 Pentatricopeptide repeat domain 2.5E-09 27 25.00 104 160
PPR_1 PPR repeat 2.5E-08 24 23.80 111 141
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.56 -1 25.90 114 143
PPR_2 PPR repeat family 5.2E-14 42 30.00 115 162
PPR PPR repeat 5.8E-08 23 25.00 116 145
RabGAP-TBC Rab-GTPase-TBC domain 0.088 3 24.50 140 190
PPR_1 PPR repeat 1.5E-10 31 23.80 145 176
ATP13 Mitochondrial ATPase expression 0.0014 9 26.70 148 181
PPR_2 PPR repeat family 1.3E-09 28 30.00 148 188
PPR PPR repeat 2.8E-06 18 25.00 151 176
PPR_long Pentacotripeptide-repeat region of PRORP 4.2E-08 23 27.00 166 253
PPR_3 Pentatricopeptide repeat domain 2.4E-08 24 25.00 173 227
PPR_1 PPR repeat 2.5E-11 33 23.80 181 212
ATP13 Mitochondrial ATPase expression 0.22 2 26.70 182 212
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.3 0 25.90 183 213
PPR_2 PPR repeat family 4.7E-19 59 30.00 183 232
PPR PPR repeat 1.7E-08 25 25.00 186 216
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.067 2 25.90 187 242
PPR_1 PPR repeat 4.3E-15 45 23.80 214 247
ATP13 Mitochondrial ATPase expression 0.24 1 26.70 219 246
PPR PPR repeat 3.3E-09 27 25.00 221 248
PPR_2 PPR repeat family 3.8E-08 24 30.00 221 255
Clathrin Region in Clathrin and VPS 0.00055 10 23.60 226 283
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.00088 9 21.90 231 266
TPR_19 Tetratricopeptide repeat 0.026 5 25.00 232 278
MRP-S27 Mitochondrial 28S ribosomal protein S27 6.8E-06 15 25.90 238 353
PPR_3 Pentatricopeptide repeat domain 1.2E-16 51 25.00 241 299
PPR_1 PPR repeat 1.4E-10 31 23.80 251 281
APAF1_C APAF-1 helical domain 0.42 1 22.80 253 305
PPR_2 PPR repeat family 5.8E-20 62 30.00 254 302
PPR PPR repeat 5E-08 23 25.00 256 286
ATP13 Mitochondrial ATPase expression 0.9 0 26.70 259 281
Toxin_YhaV Toxin with endonuclease activity YhaV 0.76 0 22.80 264 289
PPR_long Pentacotripeptide-repeat region of PRORP 1.1E-09 28 27.00 266 357
Mtf2 Mtf2 family 0.0076 6 27.00 267 294
DED Death effector domain 0.36 1 22.00 268 285
TPR_19 Tetratricopeptide repeat 0.00059 11 25.00 271 325
PPR_3 Pentatricopeptide repeat domain 1.1E-18 57 25.00 277 337
RabGAP-TBC Rab-GTPase-TBC domain 0.87 -1 24.50 277 317
PPR_1 PPR repeat 6.5E-14 42 23.80 284 316
PPR_2 PPR repeat family 2.6E-19 59 30.00 288 337
AEP1 ATPase expression protein 1 0.21 1 27.00 289 324
PPR PPR repeat 9.5E-10 29 25.00 291 321
APAF1_C APAF-1 helical domain 0.067 3 22.80 292 345
PPR_1 PPR repeat 2.9E-12 36 23.80 321 351
PPR_2 PPR repeat family 1.8E-21 66 30.00 323 371
PPR PPR repeat 3.8E-11 33 25.00 326 355
AEP1 ATPase expression protein 1 0.012 5 27.00 326 358
TPR_19 Tetratricopeptide repeat 0.29 2 25.00 336 354
RabGAP-TBC Rab-GTPase-TBC domain 0.001 9 24.50 343 392
PPR_long Pentacotripeptide-repeat region of PRORP 7.9E-07 19 27.00 344 425
PPR_3 Pentatricopeptide repeat domain 1.2E-12 38 25.00 346 405
PPR_1 PPR repeat 1.8E-13 40 23.80 355 386
PPR PPR repeat 1.5E-10 31 25.00 361 391
AEP1 ATPase expression protein 1 0.013 5 27.00 363 407
PPR_2 PPR repeat family 4.8E-15 46 30.00 365 407
PPR_1 PPR repeat 1.3E-18 57 23.80 389 422
ATP13 Mitochondrial ATPase expression 0.29 1 26.70 389 423
PPR_2 PPR repeat family 8.2E-15 45 30.00 393 427
PPR PPR repeat 2.3E-13 40 25.00 396 426
DED Death effector domain 0.0058 7 22.00 406 454
PPR_long Pentacotripeptide-repeat region of PRORP 2.2E-14 43 27.00 408 515
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00027 10 25.90 412 489
PPR_3 Pentatricopeptide repeat domain 2E-15 47 25.00 417 472
Mtf2 Mtf2 family 0.098 2 27.00 417 435
PPR_1 PPR repeat 1E-11 35 23.80 424 457
ATP13 Mitochondrial ATPase expression 0.41 1 26.70 426 493
PPR_2 PPR repeat family 5E-21 65 30.00 429 477
PPR PPR repeat 1.1E-11 35 25.00 431 461
TPR_19 Tetratricopeptide repeat 0.17 3 25.00 440 459
Toxin_YhaV Toxin with endonuclease activity YhaV 0.0051 7 22.80 444 465
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.5 -1 21.90 446 475
PPR_3 Pentatricopeptide repeat domain 2.5E-14 43 25.00 451 508
PPR_1 PPR repeat 6.4E-13 38 23.80 459 490
PPR PPR repeat 3.2E-08 24 25.00 466 494
PPR_2 PPR repeat family 7.9E-15 45 30.00 474 512
RabGAP-TBC Rab-GTPase-TBC domain 0.23 1 24.50 487 517
APAF1_C APAF-1 helical domain 0.0039 7 22.80 495 547
PPR_1 PPR repeat 1.2E-12 38 23.80 496 523
PPR_2 PPR repeat family 5.5E-13 39 30.00 498 535
PPR PPR repeat 7.5E-09 26 25.00 501 530
PPR_long Pentacotripeptide-repeat region of PRORP 4.2E-07 20 27.00 513 601
PPR_3 Pentatricopeptide repeat domain 1.5E-12 38 25.00 528 579
PPR_1 PPR repeat 5.3E-15 45 23.80 529 562
PPR_2 PPR repeat family 1.5E-18 57 30.00 533 579
Toxin_YhaV Toxin with endonuclease activity YhaV 0.21 2 22.80 535 570
PPR PPR repeat 2.3E-12 37 25.00 537 565
PPR_1 PPR repeat 0.00067 10 23.80 566 579
PPR_2 PPR repeat family 7E-09 26 30.00 568 615
Mtf2 Mtf2 family 0.00046 10 27.00 570 616
PPR PPR repeat 0.00035 11 25.00 572 601

629

PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_2
PPR
ECSIT
RabGAP-TBC
PPR_3
PPR_1
MRP-S27
PPR_2
PPR
RabGAP-TBC
PPR_1
ATP13
PPR_2
PPR
PPR_long
PPR_3
PPR_1
ATP13
MRP-S27
PPR_2
PPR
MRP-S27
PPR_1
ATP13
PPR
PPR_2
Clathrin
ECSIT
TPR_19
MRP-S27
PPR_3
PPR_1
APAF1_C
PPR_2
PPR
ATP13
Toxin_YhaV
PPR_long
Mtf2
DED
TPR_19
PPR_3
RabGAP-TBC
PPR_1
PPR_2
AEP1
PPR
APAF1_C
PPR_1
PPR_2
PPR
AEP1
TPR_19
RabGAP-TBC
PPR_long
PPR_3
PPR_1
PPR
AEP1
PPR_2
PPR_1
ATP13
PPR_2
PPR
DED
PPR_long
MRP-S27
PPR_3
Mtf2
PPR_1
ATP13
PPR_2
PPR
TPR_19
Toxin_YhaV
ECSIT
PPR_3
PPR_1
PPR
PPR_2
RabGAP-TBC
APAF1_C
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
Toxin_YhaV
PPR
PPR_1
PPR_2
Mtf2
PPR

References:

AEP1

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

Toxin_YhaV
17706670 prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli. J Mol Biol. 2007;372:894-905.

DED
9582077 NMR structure and mutagenesis of the FADD (Mort1) death-effector domain. Nature 1998;392:941-945.

ATP13

Mtf2

RabGAP-TBC

APAF1_C

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	1.8E-06	18	27.00	59	158
PPR_1	PPR repeat	0.0063	7	23.80	60	72
PPR_3	Pentatricopeptide repeat domain	0.00046	10	25.00	60	92
PPR_2	PPR repeat family	0.034	5	30.00	60	78
PPR	PPR repeat	0.0085	7	25.00	60	74
PPR_2	PPR repeat family	4.6E-10	30	30.00	78	127
PPR	PPR repeat	0.023	5	25.00	83	109
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.044	3	21.90	91	129
RabGAP-TBC	Rab-GTPase-TBC domain	0.015	5	24.50	102	137
PPR_3	Pentatricopeptide repeat domain	2.5E-09	27	25.00	104	160
PPR_1	PPR repeat	2.5E-08	24	23.80	111	141
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.56	-1	25.90	114	143
PPR_2	PPR repeat family	5.2E-14	42	30.00	115	162
PPR	PPR repeat	5.8E-08	23	25.00	116	145
RabGAP-TBC	Rab-GTPase-TBC domain	0.088	3	24.50	140	190
PPR_1	PPR repeat	1.5E-10	31	23.80	145	176
ATP13	Mitochondrial ATPase expression	0.0014	9	26.70	148	181
PPR_2	PPR repeat family	1.3E-09	28	30.00	148	188
PPR	PPR repeat	2.8E-06	18	25.00	151	176
PPR_long	Pentacotripeptide-repeat region of PRORP	4.2E-08	23	27.00	166	253
PPR_3	Pentatricopeptide repeat domain	2.4E-08	24	25.00	173	227
PPR_1	PPR repeat	2.5E-11	33	23.80	181	212
ATP13	Mitochondrial ATPase expression	0.22	2	26.70	182	212
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.3	0	25.90	183	213
PPR_2	PPR repeat family	4.7E-19	59	30.00	183	232
PPR	PPR repeat	1.7E-08	25	25.00	186	216
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.067	2	25.90	187	242
PPR_1	PPR repeat	4.3E-15	45	23.80	214	247
ATP13	Mitochondrial ATPase expression	0.24	1	26.70	219	246
PPR	PPR repeat	3.3E-09	27	25.00	221	248
PPR_2	PPR repeat family	3.8E-08	24	30.00	221	255
Clathrin	Region in Clathrin and VPS	0.00055	10	23.60	226	283
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.00088	9	21.90	231	266
TPR_19	Tetratricopeptide repeat	0.026	5	25.00	232	278
MRP-S27	Mitochondrial 28S ribosomal protein S27	6.8E-06	15	25.90	238	353
PPR_3	Pentatricopeptide repeat domain	1.2E-16	51	25.00	241	299
PPR_1	PPR repeat	1.4E-10	31	23.80	251	281
APAF1_C	APAF-1 helical domain	0.42	1	22.80	253	305
PPR_2	PPR repeat family	5.8E-20	62	30.00	254	302
PPR	PPR repeat	5E-08	23	25.00	256	286
ATP13	Mitochondrial ATPase expression	0.9	0	26.70	259	281
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.76	0	22.80	264	289
PPR_long	Pentacotripeptide-repeat region of PRORP	1.1E-09	28	27.00	266	357
Mtf2	Mtf2 family	0.0076	6	27.00	267	294
DED	Death effector domain	0.36	1	22.00	268	285
TPR_19	Tetratricopeptide repeat	0.00059	11	25.00	271	325
PPR_3	Pentatricopeptide repeat domain	1.1E-18	57	25.00	277	337
RabGAP-TBC	Rab-GTPase-TBC domain	0.87	-1	24.50	277	317
PPR_1	PPR repeat	6.5E-14	42	23.80	284	316
PPR_2	PPR repeat family	2.6E-19	59	30.00	288	337
AEP1	ATPase expression protein 1	0.21	1	27.00	289	324
PPR	PPR repeat	9.5E-10	29	25.00	291	321
APAF1_C	APAF-1 helical domain	0.067	3	22.80	292	345
PPR_1	PPR repeat	2.9E-12	36	23.80	321	351
PPR_2	PPR repeat family	1.8E-21	66	30.00	323	371
PPR	PPR repeat	3.8E-11	33	25.00	326	355
AEP1	ATPase expression protein 1	0.012	5	27.00	326	358
TPR_19	Tetratricopeptide repeat	0.29	2	25.00	336	354
RabGAP-TBC	Rab-GTPase-TBC domain	0.001	9	24.50	343	392
PPR_long	Pentacotripeptide-repeat region of PRORP	7.9E-07	19	27.00	344	425
PPR_3	Pentatricopeptide repeat domain	1.2E-12	38	25.00	346	405
PPR_1	PPR repeat	1.8E-13	40	23.80	355	386
PPR	PPR repeat	1.5E-10	31	25.00	361	391
AEP1	ATPase expression protein 1	0.013	5	27.00	363	407
PPR_2	PPR repeat family	4.8E-15	46	30.00	365	407
PPR_1	PPR repeat	1.3E-18	57	23.80	389	422
ATP13	Mitochondrial ATPase expression	0.29	1	26.70	389	423
PPR_2	PPR repeat family	8.2E-15	45	30.00	393	427
PPR	PPR repeat	2.3E-13	40	25.00	396	426
DED	Death effector domain	0.0058	7	22.00	406	454
PPR_long	Pentacotripeptide-repeat region of PRORP	2.2E-14	43	27.00	408	515
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00027	10	25.90	412	489
PPR_3	Pentatricopeptide repeat domain	2E-15	47	25.00	417	472
Mtf2	Mtf2 family	0.098	2	27.00	417	435
PPR_1	PPR repeat	1E-11	35	23.80	424	457
ATP13	Mitochondrial ATPase expression	0.41	1	26.70	426	493
PPR_2	PPR repeat family	5E-21	65	30.00	429	477
PPR	PPR repeat	1.1E-11	35	25.00	431	461
TPR_19	Tetratricopeptide repeat	0.17	3	25.00	440	459
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.0051	7	22.80	444	465
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.5	-1	21.90	446	475
PPR_3	Pentatricopeptide repeat domain	2.5E-14	43	25.00	451	508
PPR_1	PPR repeat	6.4E-13	38	23.80	459	490
PPR	PPR repeat	3.2E-08	24	25.00	466	494
PPR_2	PPR repeat family	7.9E-15	45	30.00	474	512
RabGAP-TBC	Rab-GTPase-TBC domain	0.23	1	24.50	487	517
APAF1_C	APAF-1 helical domain	0.0039	7	22.80	495	547
PPR_1	PPR repeat	1.2E-12	38	23.80	496	523
PPR_2	PPR repeat family	5.5E-13	39	30.00	498	535
PPR	PPR repeat	7.5E-09	26	25.00	501	530
PPR_long	Pentacotripeptide-repeat region of PRORP	4.2E-07	20	27.00	513	601
PPR_3	Pentatricopeptide repeat domain	1.5E-12	38	25.00	528	579
PPR_1	PPR repeat	5.3E-15	45	23.80	529	562
PPR_2	PPR repeat family	1.5E-18	57	30.00	533	579
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.21	2	22.80	535	570
PPR	PPR repeat	2.3E-12	37	25.00	537	565
PPR_1	PPR repeat	0.00067	10	23.80	566	579
PPR_2	PPR repeat family	7E-09	26	30.00	568	615
Mtf2	Mtf2 family	0.00046	10	27.00	570	616
PPR	PPR repeat	0.00035	11	25.00	572	601