c2pfam

AT1G63130.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.014 6 30.00 59 80
PPR_long Pentacotripeptide-repeat region of PRORP 3E-09 27 27.00 59 159
PPR_1 PPR repeat 0.034 4 23.80 61 73
PPR_3 Pentatricopeptide repeat domain 0.0054 7 25.00 61 93
PPR PPR repeat 0.053 4 25.00 61 75
PPR_2 PPR repeat family 6.8E-11 32 30.00 79 128
PPR PPR repeat 0.021 6 25.00 87 112
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.004 6 21.90 99 131
Mtf2 Mtf2 family 0.78 -1 27.00 100 122
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.087 2 25.90 101 144
PPR_3 Pentatricopeptide repeat domain 1.9E-11 34 25.00 104 160
RabGAP-TBC Rab-GTPase-TBC domain 0.0063 6 24.50 104 139
Coatomer_E Coatomer epsilon subunit 0.061 3 20.40 105 179
PPR_1 PPR repeat 3.6E-09 26 23.80 111 142
PPR PPR repeat 1.8E-07 21 25.00 117 146
PPR_2 PPR repeat family 1.7E-11 34 30.00 122 163
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.36 0 21.90 129 164
PPR_1 PPR repeat 3.3E-11 33 23.80 146 178
ATP13 Mitochondrial ATPase expression 0.0073 6 26.70 148 178
PPR_2 PPR repeat family 4E-17 52 30.00 149 197
PPR PPR repeat 1E-07 22 25.00 152 181
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00024 10 25.90 157 215
PPR_3 Pentatricopeptide repeat domain 2.1E-09 28 25.00 173 228
PPR_1 PPR repeat 1.9E-13 40 23.80 180 213
ATP13 Mitochondrial ATPase expression 0.096 3 26.70 183 212
PPR_2 PPR repeat family 3.1E-19 59 30.00 184 233
PPR_long Pentacotripeptide-repeat region of PRORP 7.3E-12 35 27.00 186 307
PPR PPR repeat 4.9E-09 26 25.00 187 217
PPR_3 Pentatricopeptide repeat domain 1.4E-12 38 25.00 208 266
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.8 0 26.10 209 234
PPR_1 PPR repeat 3.8E-15 46 23.80 215 248
PPR PPR repeat 5E-09 26 25.00 222 249
PPR_2 PPR repeat family 9.4E-08 22 30.00 222 254
ATP13 Mitochondrial ATPase expression 0.8 0 26.70 227 247
Coatomer_E Coatomer epsilon subunit 0.00017 11 20.40 231 324
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.0058 6 21.90 232 267
TPR_19 Tetratricopeptide repeat 0.086 4 25.00 233 278
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.15 3 26.10 239 281
ATP13 Mitochondrial ATPase expression 0.29 1 26.70 251 279
PPR_1 PPR repeat 6E-11 32 23.80 252 282
PPR_2 PPR repeat family 8.6E-21 64 30.00 254 303
PPR PPR repeat 1.5E-08 25 25.00 257 287
APAF1_C APAF-1 helical domain 0.85 0 22.80 258 305
Mtf2 Mtf2 family 0.0014 8 27.00 258 295
PPR_long Pentacotripeptide-repeat region of PRORP 3.2E-10 30 27.00 267 367
TPR_19 Tetratricopeptide repeat 0.00057 11 25.00 272 326
MRP-S27 Mitochondrial 28S ribosomal protein S27 1.2E-05 14 25.90 274 354
PPR_3 Pentatricopeptide repeat domain 1.1E-18 57 25.00 278 338
RabGAP-TBC Rab-GTPase-TBC domain 1 -1 24.50 278 318
PPR_1 PPR repeat 6.5E-14 42 23.80 285 317
PPR_2 PPR repeat family 2.6E-19 59 30.00 289 338
AEP1 ATPase expression protein 1 0.27 0 27.00 290 325
PPR PPR repeat 9.5E-10 29 25.00 292 322
APAF1_C APAF-1 helical domain 0.068 3 22.80 293 346
PPR_long Pentacotripeptide-repeat region of PRORP 2.8E-08 23 27.00 311 404
AEP1 ATPase expression protein 1 0.0069 6 27.00 320 360
PPR_1 PPR repeat 2.9E-12 36 23.80 322 352
PPR_2 PPR repeat family 1.7E-21 66 30.00 324 372
PPR PPR repeat 3.8E-11 33 25.00 327 356
TPR_14 Tetratricopeptide repeat 0.04 5 23.50 330 355
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.044 4 26.10 330 386
TPR_19 Tetratricopeptide repeat 0.29 2 25.00 337 355
RabGAP-TBC Rab-GTPase-TBC domain 0.0011 9 24.50 344 393
PPR_3 Pentatricopeptide repeat domain 1.2E-12 38 25.00 347 406
PPR_1 PPR repeat 1.8E-13 40 23.80 356 387
PPR PPR repeat 1.5E-10 31 25.00 362 392
AEP1 ATPase expression protein 1 0.013 5 27.00 364 408
PPR_2 PPR repeat family 4.8E-15 46 30.00 366 408
PPR_1 PPR repeat 3.1E-19 59 23.80 390 423
ATP13 Mitochondrial ATPase expression 0.43 1 26.70 390 424
PPR_2 PPR repeat family 5.5E-21 65 30.00 394 441
PPR PPR repeat 2.8E-13 40 25.00 397 427
PPR_long Pentacotripeptide-repeat region of PRORP 3.6E-13 39 27.00 408 516
Mtf2 Mtf2 family 0.37 1 27.00 417 434
PPR_3 Pentatricopeptide repeat domain 8.2E-14 42 25.00 418 473
PPR_1 PPR repeat 1.1E-09 28 23.80 425 458
ATP13 Mitochondrial ATPase expression 0.026 5 26.70 426 494
PPR_2 PPR repeat family 3.1E-17 53 30.00 430 478
PPR PPR repeat 1.4E-08 25 25.00 432 462
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00017 11 25.90 432 494
AEP1 ATPase expression protein 1 0.017 4 27.00 432 474
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.0039 8 26.10 434 513
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.023 4 21.90 450 474
PPR_3 Pentatricopeptide repeat domain 5.6E-13 39 25.00 453 509
PPR_1 PPR repeat 8.5E-13 38 23.80 460 491
PPR PPR repeat 1.9E-07 21 25.00 468 495
PPR_2 PPR repeat family 3E-16 50 30.00 472 513
RabGAP-TBC Rab-GTPase-TBC domain 0.96 -1 24.50 488 515
APAF1_C APAF-1 helical domain 0.0056 7 22.80 497 548
PPR_1 PPR repeat 1.2E-12 38 23.80 497 524
PPR PPR repeat 7.5E-09 26 25.00 502 531
PPR_2 PPR repeat family 4.1E-19 59 30.00 503 548
PPR_long Pentacotripeptide-repeat region of PRORP 1.8E-06 18 27.00 514 597
PPR_3 Pentatricopeptide repeat domain 1.1E-11 35 25.00 529 580
PPR_1 PPR repeat 2E-15 46 23.80 530 563
PPR_2 PPR repeat family 2.8E-19 59 30.00 534 581
PPR PPR repeat 5.3E-13 39 25.00 537 566
PPR_3 Pentatricopeptide repeat domain 1.5E-05 15 25.00 558 598
PPR_1 PPR repeat 4E-05 14 23.80 566 598
PPR_2 PPR repeat family 2.3E-06 18 30.00 569 609
PPR PPR repeat 9.9E-06 16 25.00 573 601
Mtf2 Mtf2 family 0.01 6 27.00 573 618
TPR_14 Tetratricopeptide repeat 0.66 1 23.50 576 597

630

PPR_2
PPR_long
PPR_1
PPR_3
PPR
PPR_2
PPR
ECSIT
Mtf2
MRP-S27
PPR_3
RabGAP-TBC
Coatomer_E
PPR_1
PPR
PPR_2
ECSIT
PPR_1
ATP13
PPR_2
PPR
MRP-S27
PPR_3
PPR_1
ATP13
PPR_2
PPR_long
PPR
PPR_3
RPM2
PPR_1
PPR
PPR_2
ATP13
Coatomer_E
ECSIT
TPR_19
RPM2
ATP13
PPR_1
PPR_2
PPR
APAF1_C
Mtf2
PPR_long
TPR_19
MRP-S27
PPR_3
RabGAP-TBC
PPR_1
PPR_2
AEP1
PPR
APAF1_C
PPR_long
AEP1
PPR_1
PPR_2
PPR
TPR_14
RPM2
TPR_19
RabGAP-TBC
PPR_3
PPR_1
PPR
AEP1
PPR_2
PPR_1
ATP13
PPR_2
PPR
PPR_long
Mtf2
PPR_3
PPR_1
ATP13
PPR_2
PPR
MRP-S27
AEP1
RPM2
ECSIT
PPR_3
PPR_1
PPR
PPR_2
RabGAP-TBC
APAF1_C
PPR_1
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
Mtf2
TPR_14

References:

AEP1

TPR_14

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

ATP13

Coatomer_E
10469566 Segregation of COPI-rich and anterograde-cargo-rich domains in endoplasmic-reticulum-to-Golgi transport complexes. Curr Biol 1999;9:821-824.

Mtf2

RabGAP-TBC

APAF1_C

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.014	6	30.00	59	80
PPR_long	Pentacotripeptide-repeat region of PRORP	3E-09	27	27.00	59	159
PPR_1	PPR repeat	0.034	4	23.80	61	73
PPR_3	Pentatricopeptide repeat domain	0.0054	7	25.00	61	93
PPR	PPR repeat	0.053	4	25.00	61	75
PPR_2	PPR repeat family	6.8E-11	32	30.00	79	128
PPR	PPR repeat	0.021	6	25.00	87	112
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.004	6	21.90	99	131
Mtf2	Mtf2 family	0.78	-1	27.00	100	122
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.087	2	25.90	101	144
PPR_3	Pentatricopeptide repeat domain	1.9E-11	34	25.00	104	160
RabGAP-TBC	Rab-GTPase-TBC domain	0.0063	6	24.50	104	139
Coatomer_E	Coatomer epsilon subunit	0.061	3	20.40	105	179
PPR_1	PPR repeat	3.6E-09	26	23.80	111	142
PPR	PPR repeat	1.8E-07	21	25.00	117	146
PPR_2	PPR repeat family	1.7E-11	34	30.00	122	163
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.36	0	21.90	129	164
PPR_1	PPR repeat	3.3E-11	33	23.80	146	178
ATP13	Mitochondrial ATPase expression	0.0073	6	26.70	148	178
PPR_2	PPR repeat family	4E-17	52	30.00	149	197
PPR	PPR repeat	1E-07	22	25.00	152	181
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00024	10	25.90	157	215
PPR_3	Pentatricopeptide repeat domain	2.1E-09	28	25.00	173	228
PPR_1	PPR repeat	1.9E-13	40	23.80	180	213
ATP13	Mitochondrial ATPase expression	0.096	3	26.70	183	212
PPR_2	PPR repeat family	3.1E-19	59	30.00	184	233
PPR_long	Pentacotripeptide-repeat region of PRORP	7.3E-12	35	27.00	186	307
PPR	PPR repeat	4.9E-09	26	25.00	187	217
PPR_3	Pentatricopeptide repeat domain	1.4E-12	38	25.00	208	266
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.8	0	26.10	209	234
PPR_1	PPR repeat	3.8E-15	46	23.80	215	248
PPR	PPR repeat	5E-09	26	25.00	222	249
PPR_2	PPR repeat family	9.4E-08	22	30.00	222	254
ATP13	Mitochondrial ATPase expression	0.8	0	26.70	227	247
Coatomer_E	Coatomer epsilon subunit	0.00017	11	20.40	231	324
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.0058	6	21.90	232	267
TPR_19	Tetratricopeptide repeat	0.086	4	25.00	233	278
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.15	3	26.10	239	281
ATP13	Mitochondrial ATPase expression	0.29	1	26.70	251	279
PPR_1	PPR repeat	6E-11	32	23.80	252	282
PPR_2	PPR repeat family	8.6E-21	64	30.00	254	303
PPR	PPR repeat	1.5E-08	25	25.00	257	287
APAF1_C	APAF-1 helical domain	0.85	0	22.80	258	305
Mtf2	Mtf2 family	0.0014	8	27.00	258	295
PPR_long	Pentacotripeptide-repeat region of PRORP	3.2E-10	30	27.00	267	367
TPR_19	Tetratricopeptide repeat	0.00057	11	25.00	272	326
MRP-S27	Mitochondrial 28S ribosomal protein S27	1.2E-05	14	25.90	274	354
PPR_3	Pentatricopeptide repeat domain	1.1E-18	57	25.00	278	338
RabGAP-TBC	Rab-GTPase-TBC domain	1	-1	24.50	278	318
PPR_1	PPR repeat	6.5E-14	42	23.80	285	317
PPR_2	PPR repeat family	2.6E-19	59	30.00	289	338
AEP1	ATPase expression protein 1	0.27	0	27.00	290	325
PPR	PPR repeat	9.5E-10	29	25.00	292	322
APAF1_C	APAF-1 helical domain	0.068	3	22.80	293	346
PPR_long	Pentacotripeptide-repeat region of PRORP	2.8E-08	23	27.00	311	404
AEP1	ATPase expression protein 1	0.0069	6	27.00	320	360
PPR_1	PPR repeat	2.9E-12	36	23.80	322	352
PPR_2	PPR repeat family	1.7E-21	66	30.00	324	372
PPR	PPR repeat	3.8E-11	33	25.00	327	356
TPR_14	Tetratricopeptide repeat	0.04	5	23.50	330	355
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.044	4	26.10	330	386
TPR_19	Tetratricopeptide repeat	0.29	2	25.00	337	355
RabGAP-TBC	Rab-GTPase-TBC domain	0.0011	9	24.50	344	393
PPR_3	Pentatricopeptide repeat domain	1.2E-12	38	25.00	347	406
PPR_1	PPR repeat	1.8E-13	40	23.80	356	387
PPR	PPR repeat	1.5E-10	31	25.00	362	392
AEP1	ATPase expression protein 1	0.013	5	27.00	364	408
PPR_2	PPR repeat family	4.8E-15	46	30.00	366	408
PPR_1	PPR repeat	3.1E-19	59	23.80	390	423
ATP13	Mitochondrial ATPase expression	0.43	1	26.70	390	424
PPR_2	PPR repeat family	5.5E-21	65	30.00	394	441
PPR	PPR repeat	2.8E-13	40	25.00	397	427
PPR_long	Pentacotripeptide-repeat region of PRORP	3.6E-13	39	27.00	408	516
Mtf2	Mtf2 family	0.37	1	27.00	417	434
PPR_3	Pentatricopeptide repeat domain	8.2E-14	42	25.00	418	473
PPR_1	PPR repeat	1.1E-09	28	23.80	425	458
ATP13	Mitochondrial ATPase expression	0.026	5	26.70	426	494
PPR_2	PPR repeat family	3.1E-17	53	30.00	430	478
PPR	PPR repeat	1.4E-08	25	25.00	432	462
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00017	11	25.90	432	494
AEP1	ATPase expression protein 1	0.017	4	27.00	432	474
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.0039	8	26.10	434	513
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.023	4	21.90	450	474
PPR_3	Pentatricopeptide repeat domain	5.6E-13	39	25.00	453	509
PPR_1	PPR repeat	8.5E-13	38	23.80	460	491
PPR	PPR repeat	1.9E-07	21	25.00	468	495
PPR_2	PPR repeat family	3E-16	50	30.00	472	513
RabGAP-TBC	Rab-GTPase-TBC domain	0.96	-1	24.50	488	515
APAF1_C	APAF-1 helical domain	0.0056	7	22.80	497	548
PPR_1	PPR repeat	1.2E-12	38	23.80	497	524
PPR	PPR repeat	7.5E-09	26	25.00	502	531
PPR_2	PPR repeat family	4.1E-19	59	30.00	503	548
PPR_long	Pentacotripeptide-repeat region of PRORP	1.8E-06	18	27.00	514	597
PPR_3	Pentatricopeptide repeat domain	1.1E-11	35	25.00	529	580
PPR_1	PPR repeat	2E-15	46	23.80	530	563
PPR_2	PPR repeat family	2.8E-19	59	30.00	534	581
PPR	PPR repeat	5.3E-13	39	25.00	537	566
PPR_3	Pentatricopeptide repeat domain	1.5E-05	15	25.00	558	598
PPR_1	PPR repeat	4E-05	14	23.80	566	598
PPR_2	PPR repeat family	2.3E-06	18	30.00	569	609
PPR	PPR repeat	9.9E-06	16	25.00	573	601
Mtf2	Mtf2 family	0.01	6	27.00	573	618
TPR_14	Tetratricopeptide repeat	0.66	1	23.50	576	597