c2pfam

AT1G63160.1 :

Domain Description Evalue Bits GA Start End
Rad17 Rad17 cell cycle checkpoint protein 1.2E-08 26 19.70 13 81
RuvB_N Holliday junction DNA helicase ruvB N-terminus 2.4E-06 19 20.00 22 73
Mg_chelatase Magnesium chelatase, subunit ChlI 9.9E-07 20 20.30 27 86
AAA_16 AAA ATPase domain 7.8E-07 21 32.60 35 75
TniB Bacterial TniB protein 0.0027 8 20.10 39 64
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 1.6E-05 15 23.10 40 101
AAA_19 AAA domain 2.3E-05 16 25.10 47 99
IstB_IS21 IstB-like ATP binding protein 4.6E-05 14 24.10 48 78
T2SSE Type II/IV secretion system protein 8.6E-05 13 24.90 48 73
KTI12 Chromatin associated protein KTI12 9.1E-05 13 21.60 48 123
ResIII Type III restriction enzyme, res subunit 0.0023 9 20.90 50 82
AAA_7 P-loop containing dynein motor region 4E-05 14 25.80 50 118
DEAD DEAD/DEAH box helicase 0.12 3 20.60 50 70
AAA_5 AAA domain (dynein-related subfamily) 1E-06 20 20.80 50 137
AAA_24 AAA domain 4.2E-06 18 27.00 50 138
AAA_14 AAA domain 2.5E-09 28 27.00 50 143
AAA ATPase family associated with various cellular activities (AAA) 5.1E-17 54 20.80 51 168
AAA_22 AAA domain 2E-05 16 27.00 51 74
AAA_11 AAA domain 6.4E-07 21 27.00 51 85
AAA_30 AAA domain 1.8E-05 16 27.00 51 135
ABC_tran ABC transporter 8.1E-05 14 23.10 51 112
NTPase_1 NTPase 0.00019 13 23.90 51 77
AAA_3 ATPase family associated with various cellular activities (AAA) 0.00014 13 21.10 51 137
SRP54 SRP54-type protein, GTPase domain 0.00051 11 20.50 51 80
DUF2075 Uncharacterized conserved protein (DUF2075) 0.00086 10 20.30 52 99
AAA_25 AAA domain 3.8E-05 14 27.00 52 73
AAA_28 AAA domain 2.6E-05 16 27.00 52 76
RNA_helicase RNA helicase 8.7E-05 14 21.50 52 87
Viral_helicase1 Viral (Superfamily 1) RNA helicase 8.2E-08 23 20.90 52 131
AAA_18 AAA domain 9E-06 17 29.40 52 93
DNA_pol3_delta2 DNA polymerase III, delta subunit 2E-12 39 27.00 89 172
DEAD DEAD/DEAH box helicase 0.0015 10 20.60 92 138
DUF5119 Domain of unknown function (DUF5119) 0.0048 8 27.00 96 144
ResIII Type III restriction enzyme, res subunit 0.13 3 20.90 103 147
AAA_22 AAA domain 0.0038 9 27.00 108 141
AAA_19 AAA domain 0.75 1 25.10 110 135
AAA_16 AAA ATPase domain 0.16 4 32.60 111 138
TniB Bacterial TniB protein 0.02 5 20.10 112 137
Mg_chelatase Magnesium chelatase, subunit ChlI 0.5 1 20.30 114 138
DUF5119 Domain of unknown function (DUF5119) 0.098 4 27.00 181 218
AAA_assoc_2 AAA C-terminal domain 1.4E-05 17 34.30 190 220
Rep_fac_C Replication factor C 6.2E-23 72 21.00 237 322

333

Rad17
RuvB_N
Mg_chelatase
AAA_16
TniB
MeaB
AAA_19
IstB_IS21
T2SSE
KTI12
ResIII
AAA_7
DEAD
AAA_5
AAA_24
AAA_14
AAA
AAA_22
AAA_11
AAA_30
ABC_tran
NTPase_1
AAA_3
SRP54
DUF2075
AAA_25
AAA_28
RNA_helicase
Viral_helicase1
AAA_18
DNA_pol3_delta2
DEAD
DUF5119
ResIII
AAA_22
AAA_19
AAA_16
TniB
Mg_chelatase
DUF5119
AAA_assoc_2
Rep_fac_C

References:

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

AAA_3
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Rep_fac_C

DNA_pol3_delta2

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

DUF2075

DUF5119

ResIII

IstB_IS21

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

MeaB

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

NTPase_1

AAA_assoc_2

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_7

Viral_helicase1
8269709 Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 1993;28:375-430.
10217401 RNA helicase activity of Semliki Forest virus replicase protein NSP2. FEBS Lett 1999;448:19-22.
8057461 ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2. J Virol 1994;68:5804-5810.
10982322 Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. J Virol 2000;74:8803-8811.

AAA_30

AAA_28

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_25

AAA_24

T2SSE

AAA_22

AAA_19

AAA_18

AAA_16

AAA_14

AAA_11

KTI12
15772087 Physical and functional interaction between Elongator and the chromatin-associated Kti12 protein. J Biol Chem 2005;280:19454-19460.

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

Domain	Description	Evalue	Bits	GA	Start	End
Rad17	Rad17 cell cycle checkpoint protein	1.2E-08	26	19.70	13	81
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	2.4E-06	19	20.00	22	73
Mg_chelatase	Magnesium chelatase, subunit ChlI	9.9E-07	20	20.30	27	86
AAA_16	AAA ATPase domain	7.8E-07	21	32.60	35	75
TniB	Bacterial TniB protein	0.0027	8	20.10	39	64
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	1.6E-05	15	23.10	40	101
AAA_19	AAA domain	2.3E-05	16	25.10	47	99
IstB_IS21	IstB-like ATP binding protein	4.6E-05	14	24.10	48	78
T2SSE	Type II/IV secretion system protein	8.6E-05	13	24.90	48	73
KTI12	Chromatin associated protein KTI12	9.1E-05	13	21.60	48	123
ResIII	Type III restriction enzyme, res subunit	0.0023	9	20.90	50	82
AAA_7	P-loop containing dynein motor region	4E-05	14	25.80	50	118
DEAD	DEAD/DEAH box helicase	0.12	3	20.60	50	70
AAA_5	AAA domain (dynein-related subfamily)	1E-06	20	20.80	50	137
AAA_24	AAA domain	4.2E-06	18	27.00	50	138
AAA_14	AAA domain	2.5E-09	28	27.00	50	143
AAA	ATPase family associated with various cellular activities (AAA)	5.1E-17	54	20.80	51	168
AAA_22	AAA domain	2E-05	16	27.00	51	74
AAA_11	AAA domain	6.4E-07	21	27.00	51	85
AAA_30	AAA domain	1.8E-05	16	27.00	51	135
ABC_tran	ABC transporter	8.1E-05	14	23.10	51	112
NTPase_1	NTPase	0.00019	13	23.90	51	77
AAA_3	ATPase family associated with various cellular activities (AAA)	0.00014	13	21.10	51	137
SRP54	SRP54-type protein, GTPase domain	0.00051	11	20.50	51	80
DUF2075	Uncharacterized conserved protein (DUF2075)	0.00086	10	20.30	52	99
AAA_25	AAA domain	3.8E-05	14	27.00	52	73
AAA_28	AAA domain	2.6E-05	16	27.00	52	76
RNA_helicase	RNA helicase	8.7E-05	14	21.50	52	87
Viral_helicase1	Viral (Superfamily 1) RNA helicase	8.2E-08	23	20.90	52	131
AAA_18	AAA domain	9E-06	17	29.40	52	93
DNA_pol3_delta2	DNA polymerase III, delta subunit	2E-12	39	27.00	89	172
DEAD	DEAD/DEAH box helicase	0.0015	10	20.60	92	138
DUF5119	Domain of unknown function (DUF5119)	0.0048	8	27.00	96	144
ResIII	Type III restriction enzyme, res subunit	0.13	3	20.90	103	147
AAA_22	AAA domain	0.0038	9	27.00	108	141
AAA_19	AAA domain	0.75	1	25.10	110	135
AAA_16	AAA ATPase domain	0.16	4	32.60	111	138
TniB	Bacterial TniB protein	0.02	5	20.10	112	137
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.5	1	20.30	114	138
DUF5119	Domain of unknown function (DUF5119)	0.098	4	27.00	181	218
AAA_assoc_2	AAA C-terminal domain	1.4E-05	17	34.30	190	220
Rep_fac_C	Replication factor C	6.2E-23	72	21.00	237	322