c2pfam

AT1G63270.1 :

Domain Description Evalue Bits GA Start End
T2SSE Type II/IV secretion system protein 1.9E-05 15 24.90 3 61
RsgA_GTPase RsgA GTPase 5.2E-05 14 30.00 17 66
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.00024 11 23.10 20 56
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00019 12 26.60 23 57
AAA_16 AAA ATPase domain 9.3E-07 20 32.60 24 156
AAA_23 AAA domain 6.2E-06 18 27.00 25 56
ABC_tran ABC transporter 1.1E-29 94 23.10 26 166
AAA_15 AAA ATPase domain 4.9E-06 17 32.10 28 63
AAA_29 P-loop containing region of AAA domain 5.8E-07 20 27.00 30 53
AAA_30 AAA domain 0.00046 11 27.00 34 61
AAA_22 AAA domain 4.7E-05 14 27.00 35 59
SMC_N RecF/RecN/SMC N terminal domain 0.00079 10 40.00 37 53
AAA_14 AAA domain 0.0001 13 27.00 37 114
VirE Virulence-associated protein E 0.00012 12 21.50 37 58
FtsK_SpoIIIE FtsK/SpoIIIE family 0.00016 12 21.20 38 56
G-alpha G-protein alpha subunit 0.00011 12 20.10 38 63
AAA_28 AAA domain 0.00017 13 27.00 39 57
AAA_5 AAA domain (dynein-related subfamily) 9.1E-05 13 20.80 39 86
NACHT NACHT domain 0.00031 11 20.40 39 57
SRP54 SRP54-type protein, GTPase domain 0.00031 11 20.50 39 85
MutS_V MutS domain V 0.00034 11 19.90 40 57
AAA ATPase family associated with various cellular activities (AAA) 0.0012 10 20.80 40 206
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 4.1E-06 17 27.00 40 68
AAA_18 AAA domain 7.8E-05 14 29.40 40 96
AAA_13 AAA domain 0.00026 10 36.00 43 80
SMC_N RecF/RecN/SMC N terminal domain 2.2E-07 21 40.00 119 194
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00062 10 27.00 136 198

229

T2SSE
RsgA_GTPase
MeaB
TsaE
AAA_16
AAA_23
ABC_tran
AAA_15
AAA_29
AAA_30
AAA_22
SMC_N
AAA_14
VirE
FtsK_SpoIIIE
G-alpha
AAA_28
AAA_5
NACHT
SRP54
MutS_V
AAA
AAA_21
AAA_18
AAA_13
SMC_N
AAA_21

References:

VirE

AAA_16

AAA_15

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

G-alpha
8073283 Structures of active conformations of Gi alpha 1 and the mechanism of GTP hydrolysis. Science 1994;265:1405-1412.
8851656 How G proteins work: a continuing story. Trends Biochem Sci 1996;21:41-44.

AAA_13

TsaE

RsgA_GTPase

FtsK_SpoIIIE
7592387 A new Escherichia coli cell division gene, ftsK. J Bacteriol 1995;177:6211-6222.
8160014 Bacillus subtilis spoIIIE protein required for DNA segregation during asymmetric cell division. Science 1994;264:572-575.

T2SSE

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

MeaB

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

AAA_29

AAA_28

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

AAA_22

AAA_21

MutS_V
9722634 Domain organization and functional analysis of Thermus thermophilus MutS protein [published erratum appears in Nucleic Acids Res 1998 Oct 15;26(20):following 4789] Nucleic Acids Res 1998;26:4153-4159.
8036718 Colon cancer and DNA repair: have mismatches met their match? Trends Genet 1994;10:164-168.
8510668 The yeast gene MSH3 defines a new class of eukaryotic MutS homologues. Mol Gen Genet 1993;239:97-108.
11048710 Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Nature 2000;407:703-710.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
T2SSE	Type II/IV secretion system protein	1.9E-05	15	24.90	3	61
RsgA_GTPase	RsgA GTPase	5.2E-05	14	30.00	17	66
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.00024	11	23.10	20	56
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00019	12	26.60	23	57
AAA_16	AAA ATPase domain	9.3E-07	20	32.60	24	156
AAA_23	AAA domain	6.2E-06	18	27.00	25	56
ABC_tran	ABC transporter	1.1E-29	94	23.10	26	166
AAA_15	AAA ATPase domain	4.9E-06	17	32.10	28	63
AAA_29	P-loop containing region of AAA domain	5.8E-07	20	27.00	30	53
AAA_30	AAA domain	0.00046	11	27.00	34	61
AAA_22	AAA domain	4.7E-05	14	27.00	35	59
SMC_N	RecF/RecN/SMC N terminal domain	0.00079	10	40.00	37	53
AAA_14	AAA domain	0.0001	13	27.00	37	114
VirE	Virulence-associated protein E	0.00012	12	21.50	37	58
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.00016	12	21.20	38	56
G-alpha	G-protein alpha subunit	0.00011	12	20.10	38	63
AAA_28	AAA domain	0.00017	13	27.00	39	57
AAA_5	AAA domain (dynein-related subfamily)	9.1E-05	13	20.80	39	86
NACHT	NACHT domain	0.00031	11	20.40	39	57
SRP54	SRP54-type protein, GTPase domain	0.00031	11	20.50	39	85
MutS_V	MutS domain V	0.00034	11	19.90	40	57
AAA	ATPase family associated with various cellular activities (AAA)	0.0012	10	20.80	40	206
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	4.1E-06	17	27.00	40	68
AAA_18	AAA domain	7.8E-05	14	29.40	40	96
AAA_13	AAA domain	0.00026	10	36.00	43	80
SMC_N	RecF/RecN/SMC N terminal domain	2.2E-07	21	40.00	119	194
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00062	10	27.00	136	198