c2pfam

AT1G06140.1 :

Domain Description Evalue Bits GA Start End
ChAPs ChAPs (Chs5p-Arf1p-binding proteins) 0.63 -2 19.90 43 71
PPR PPR repeat 0.35 1 25.00 44 64
TPR_19 Tetratricopeptide repeat 0.074 3 25.00 45 71
PPR_2 PPR repeat family 0.00013 12 30.00 71 102
PPR_1 PPR repeat 0.15 1 23.80 71 82
PPR PPR repeat 0.002 8 25.00 74 86
PPR PPR repeat 0.0014 9 25.00 149 172
PPR_1 PPR repeat 0.026 4 23.80 149 169
PPR_3 Pentatricopeptide repeat domain 0.37 1 25.00 149 170
TPR_14 Tetratricopeptide repeat 0.38 2 23.50 150 170
PPR_2 PPR repeat family 0.061 3 30.00 150 170
TPR_19 Tetratricopeptide repeat 0.067 3 25.00 150 171
TPR_8 Tetratricopeptide repeat 0.099 3 25.70 153 168
PPR_2 PPR repeat family 2.8E-07 20 30.00 174 220
PPR PPR repeat 0.00023 11 25.00 176 205
ChAPs ChAPs (Chs5p-Arf1p-binding proteins) 0.0078 5 19.90 245 307
PPR PPR repeat 0.00049 10 25.00 251 271
PPR_2 PPR repeat family 0.021 5 30.00 251 270
PPR_1 PPR repeat 0.031 4 23.80 251 270
PPR_long Pentacotripeptide-repeat region of PRORP 7.7E-06 15 27.00 271 364
PPR_3 Pentatricopeptide repeat domain 1.3E-06 18 25.00 273 322
PPR_1 PPR repeat 6.4E-10 28 23.80 274 303
PPR_2 PPR repeat family 6.6E-13 38 30.00 275 319
PPR PPR repeat 3.2E-10 29 25.00 278 307
TPR_14 Tetratricopeptide repeat 0.83 1 23.50 280 306
PPR PPR repeat 0.035 4 25.00 319 343
PPR_2 PPR repeat family 0.0072 6 30.00 336 359
PPR_3 Pentatricopeptide repeat domain 7.1E-08 22 25.00 338 389
PPR_1 PPR repeat 2.2E-06 17 23.80 341 373
PPR_2 PPR repeat family 1.2E-05 15 30.00 346 378
PPR PPR repeat 9.4E-08 22 25.00 350 378
PPR_2 PPR repeat family 2.6E-15 46 30.00 376 424
PPR_1 PPR repeat 1.6E-06 17 23.80 376 405
PPR_3 Pentatricopeptide repeat domain 2.9E-07 20 25.00 377 423
PPR PPR repeat 1.8E-11 33 25.00 379 408
TPR_1 Tetratricopeptide repeat 0.0003 10 20.40 380 403
PPR_long Pentacotripeptide-repeat region of PRORP 6.4E-10 28 27.00 395 530
PPR_3 Pentatricopeptide repeat domain 8E-06 15 25.00 401 439
PPR_1 PPR repeat 0.00029 10 23.80 408 439
PPR PPR repeat 6E-06 16 25.00 414 441
PPR_2 PPR repeat family 0.00019 11 30.00 418 456
PPR_1 PPR repeat 0.00012 11 23.80 444 475
PPR_2 PPR repeat family 0.13 2 30.00 452 476
PPR PPR repeat 0.00062 10 25.00 452 476
TPR_8 Tetratricopeptide repeat 0.055 4 25.70 481 513
PPR PPR repeat 0.27 1 25.00 483 503
TPR_14 Tetratricopeptide repeat 0.072 4 23.50 483 519
PPR_3 Pentatricopeptide repeat domain 0.4 0 25.00 485 506
ChAPs ChAPs (Chs5p-Arf1p-binding proteins) 0.0096 4 19.90 493 532
TPR_19 Tetratricopeptide repeat 0.09 3 25.00 500 531
TPR_8 Tetratricopeptide repeat 0.75 0 25.70 516 529
PPR PPR repeat 0.071 3 25.00 517 545

558

ChAPs
PPR
TPR_19
PPR_2
PPR_1
PPR
PPR
PPR_1
PPR_3
TPR_14
PPR_2
TPR_19
TPR_8
PPR_2
PPR
ChAPs
PPR
PPR_2
PPR_1
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_14
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR_1
PPR_3
PPR
TPR_1
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_8
PPR
TPR_14
PPR_3
ChAPs
TPR_19
TPR_8
PPR

References:

ChAPs
16498409 Arf1p, Chs5p and the ChAPs are required for export of specialized cargo from the Golgi. EMBO J. 2006;25:943-954.

TPR_8

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
ChAPs	ChAPs (Chs5p-Arf1p-binding proteins)	0.63	-2	19.90	43	71
PPR	PPR repeat	0.35	1	25.00	44	64
TPR_19	Tetratricopeptide repeat	0.074	3	25.00	45	71
PPR_2	PPR repeat family	0.00013	12	30.00	71	102
PPR_1	PPR repeat	0.15	1	23.80	71	82
PPR	PPR repeat	0.002	8	25.00	74	86
PPR	PPR repeat	0.0014	9	25.00	149	172
PPR_1	PPR repeat	0.026	4	23.80	149	169
PPR_3	Pentatricopeptide repeat domain	0.37	1	25.00	149	170
TPR_14	Tetratricopeptide repeat	0.38	2	23.50	150	170
PPR_2	PPR repeat family	0.061	3	30.00	150	170
TPR_19	Tetratricopeptide repeat	0.067	3	25.00	150	171
TPR_8	Tetratricopeptide repeat	0.099	3	25.70	153	168
PPR_2	PPR repeat family	2.8E-07	20	30.00	174	220
PPR	PPR repeat	0.00023	11	25.00	176	205
ChAPs	ChAPs (Chs5p-Arf1p-binding proteins)	0.0078	5	19.90	245	307
PPR	PPR repeat	0.00049	10	25.00	251	271
PPR_2	PPR repeat family	0.021	5	30.00	251	270
PPR_1	PPR repeat	0.031	4	23.80	251	270
PPR_long	Pentacotripeptide-repeat region of PRORP	7.7E-06	15	27.00	271	364
PPR_3	Pentatricopeptide repeat domain	1.3E-06	18	25.00	273	322
PPR_1	PPR repeat	6.4E-10	28	23.80	274	303
PPR_2	PPR repeat family	6.6E-13	38	30.00	275	319
PPR	PPR repeat	3.2E-10	29	25.00	278	307
TPR_14	Tetratricopeptide repeat	0.83	1	23.50	280	306
PPR	PPR repeat	0.035	4	25.00	319	343
PPR_2	PPR repeat family	0.0072	6	30.00	336	359
PPR_3	Pentatricopeptide repeat domain	7.1E-08	22	25.00	338	389
PPR_1	PPR repeat	2.2E-06	17	23.80	341	373
PPR_2	PPR repeat family	1.2E-05	15	30.00	346	378
PPR	PPR repeat	9.4E-08	22	25.00	350	378
PPR_2	PPR repeat family	2.6E-15	46	30.00	376	424
PPR_1	PPR repeat	1.6E-06	17	23.80	376	405
PPR_3	Pentatricopeptide repeat domain	2.9E-07	20	25.00	377	423
PPR	PPR repeat	1.8E-11	33	25.00	379	408
TPR_1	Tetratricopeptide repeat	0.0003	10	20.40	380	403
PPR_long	Pentacotripeptide-repeat region of PRORP	6.4E-10	28	27.00	395	530
PPR_3	Pentatricopeptide repeat domain	8E-06	15	25.00	401	439
PPR_1	PPR repeat	0.00029	10	23.80	408	439
PPR	PPR repeat	6E-06	16	25.00	414	441
PPR_2	PPR repeat family	0.00019	11	30.00	418	456
PPR_1	PPR repeat	0.00012	11	23.80	444	475
PPR_2	PPR repeat family	0.13	2	30.00	452	476
PPR	PPR repeat	0.00062	10	25.00	452	476
TPR_8	Tetratricopeptide repeat	0.055	4	25.70	481	513
PPR	PPR repeat	0.27	1	25.00	483	503
TPR_14	Tetratricopeptide repeat	0.072	4	23.50	483	519
PPR_3	Pentatricopeptide repeat domain	0.4	0	25.00	485	506
ChAPs	ChAPs (Chs5p-Arf1p-binding proteins)	0.0096	4	19.90	493	532
TPR_19	Tetratricopeptide repeat	0.09	3	25.00	500	531
TPR_8	Tetratricopeptide repeat	0.75	0	25.70	516	529
PPR	PPR repeat	0.071	3	25.00	517	545