c2pfam

AT1G63980.1 :

Domain Description Evalue Bits GA Start End
G-patch G-patch domain 9.8E-18 54 20.30 16 58
G-patch_2 G-patch domain 1.7E-06 18 21.30 17 60
PI3K_1B_p101 Phosphoinositide 3-kinase gamma adapter protein p101 subunit 0.0005 8 18.20 64 185
NOA36 NOA36 protein 0.015 5 25.00 71 104
RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc31 0.021 5 22.80 71 103
CobT Cobalamin biosynthesis protein CobT 0.0038 7 23.00 72 108
Voldacs Regulator of volume decrease after cellular swelling 0.04 4 22.10 78 103
RXT2_N RXT2-like, N-terminal 0.0058 7 21.10 81 114
DNA_pol_phi DNA polymerase phi 0.022 3 19.50 83 104
Sigma70_ner Sigma-70, non-essential region 0.0057 7 24.50 85 142
Cwf_Cwc_15 Cwf15/Cwc15 cell cycle control protein 0.0014 9 25.00 86 120
Nop14 Nop14-like family 0.099 1 34.90 87 108
RRN3 RNA polymerase I specific transcription initiation factor RRN3 0.11 1 20.60 88 109
DUF2457 Protein of unknown function (DUF2457) 0.028 4 30.00 90 107
PucR Purine catabolism regulatory protein-like family 0.055 4 28.90 132 173
SARAF SOCE-associated regulatory factor of calcium homoeostasis 4.3E-05 13 30.80 140 222
Cwf_Cwc_15 Cwf15/Cwc15 cell cycle control protein 0.00032 11 25.00 208 296
Nop14 Nop14-like family 6.2E-05 11 34.90 213 316
PucR Purine catabolism regulatory protein-like family 0.037 4 28.90 221 247
G-patch_2 G-patch domain 0.86 0 21.30 228 247
RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc31 0.0048 7 22.80 236 294
NOA36 NOA36 protein 0.00021 11 25.00 250 294
RXT2_N RXT2-like, N-terminal 0.043 4 21.10 253 321
DNA_pol_phi DNA polymerase phi 4.9E-05 12 19.50 257 329
DUF2457 Protein of unknown function (DUF2457) 0.00086 9 30.00 260 296
CobT Cobalamin biosynthesis protein CobT 0.024 4 23.00 265 297
PI3K_1B_p101 Phosphoinositide 3-kinase gamma adapter protein p101 subunit 0.0093 4 18.20 265 307
Voldacs Regulator of volume decrease after cellular swelling 0.0016 9 22.10 266 289
RRN3 RNA polymerase I specific transcription initiation factor RRN3 0.00018 10 20.60 267 306
Sigma70_ner Sigma-70, non-essential region 0.0002 11 24.50 269 328

391

G-patch
G-patch_2
PI3K_1B_p101
NOA36
RNA_pol_3_Rpc31
CobT
Voldacs
RXT2_N
DNA_pol_phi
Sigma70_ner
Cwf_Cwc_15
Nop14
RRN3
DUF2457
PucR
SARAF
Cwf_Cwc_15
Nop14
PucR
G-patch_2
RNA_pol_3_Rpc31
NOA36
RXT2_N
DNA_pol_phi
DUF2457
CobT
PI3K_1B_p101
Voldacs
RRN3
Sigma70_ner

References:

G-patch
10470032 G-patch: a new conserved domain in eukaryotic RNA-processing proteins and type D retroviral polyproteins. Trends Biochem Sci 1999;24:342-344.

DNA_pol_phi
12093911 The fifth essential DNA polymerase phi in Saccharomyces cerevisiae is localized to the nucleolus and plays an important role in synthesis of rRNA. Proc Natl Acad Sci U S A 2002;99:9133-9138.

PI3K_1B_p101
11395417 Synthesis and function of 3-phosphorylated inositol lipids. Annu Rev Biochem. 2001;70:535-602.

G-patch_2

CobT
1917840 Genetic and sequence analyses of a Pseudomonas denitrificans DNA fragment containing two cob genes. J Bacteriol 1991;173:6058-6065.

Sigma70_ner
11931761 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 2002;9:527-539.
8858155 Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase. Cell 1996;87:127-136.

PucR
11344136 Functional analysis of 14 genes that constitute the purine catabolic pathway in Bacillus subtilis and evidence for a novel regulon controlled by the PucR transcription activator. J Bacteriol 2001;183:3293-3302.

SARAF

DUF2457

NOA36

RNA_pol_3_Rpc31
16877568 Ancient origin, functional conservation and fast evolution of DNA-dependent RNA polymerase III. Nucleic Acids Res. 2006;34:3615-3624.

Cwf_Cwc_15
11884590 Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs. Mol Cell Biol 2002;22:2011-2024.

RXT2_N
10628851 Functional analysis of 150 deletion mutants in Saccharomyces cerevisiae by a systematic approach. Mol Gen Genet. 1999;262:683-702.
14562095 Global analysis of protein localization in budding yeast. Nature 2003;425:686-691.

RRN3
8670901 RRN3 gene of Saccharomyces cerevisiae encodes an essential RNA polymerase I transcription factor which interacts with the polymerase independently of DNA template. EMBO J 1996;15:3964-3973.

Voldacs

Nop14
11694595 Novel stress-responsive genes EMG1 and NOP14 encode conserved, interacting proteins required for 40S ribosome biogenesis. Mol Biol Cell 2001;12:3644-3657.

Domain	Description	Evalue	Bits	GA	Start	End
G-patch	G-patch domain	9.8E-18	54	20.30	16	58
G-patch_2	G-patch domain	1.7E-06	18	21.30	17	60
PI3K_1B_p101	Phosphoinositide 3-kinase gamma adapter protein p101 subunit	0.0005	8	18.20	64	185
NOA36	NOA36 protein	0.015	5	25.00	71	104
RNA_pol_3_Rpc31	DNA-directed RNA polymerase III subunit Rpc31	0.021	5	22.80	71	103
CobT	Cobalamin biosynthesis protein CobT	0.0038	7	23.00	72	108
Voldacs	Regulator of volume decrease after cellular swelling	0.04	4	22.10	78	103
RXT2_N	RXT2-like, N-terminal	0.0058	7	21.10	81	114
DNA_pol_phi	DNA polymerase phi	0.022	3	19.50	83	104
Sigma70_ner	Sigma-70, non-essential region	0.0057	7	24.50	85	142
Cwf_Cwc_15	Cwf15/Cwc15 cell cycle control protein	0.0014	9	25.00	86	120
Nop14	Nop14-like family	0.099	1	34.90	87	108
RRN3	RNA polymerase I specific transcription initiation factor RRN3	0.11	1	20.60	88	109
DUF2457	Protein of unknown function (DUF2457)	0.028	4	30.00	90	107
PucR	Purine catabolism regulatory protein-like family	0.055	4	28.90	132	173
SARAF	SOCE-associated regulatory factor of calcium homoeostasis	4.3E-05	13	30.80	140	222
Cwf_Cwc_15	Cwf15/Cwc15 cell cycle control protein	0.00032	11	25.00	208	296
Nop14	Nop14-like family	6.2E-05	11	34.90	213	316
PucR	Purine catabolism regulatory protein-like family	0.037	4	28.90	221	247
G-patch_2	G-patch domain	0.86	0	21.30	228	247
RNA_pol_3_Rpc31	DNA-directed RNA polymerase III subunit Rpc31	0.0048	7	22.80	236	294
NOA36	NOA36 protein	0.00021	11	25.00	250	294
RXT2_N	RXT2-like, N-terminal	0.043	4	21.10	253	321
DNA_pol_phi	DNA polymerase phi	4.9E-05	12	19.50	257	329
DUF2457	Protein of unknown function (DUF2457)	0.00086	9	30.00	260	296
CobT	Cobalamin biosynthesis protein CobT	0.024	4	23.00	265	297
PI3K_1B_p101	Phosphoinositide 3-kinase gamma adapter protein p101 subunit	0.0093	4	18.20	265	307
Voldacs	Regulator of volume decrease after cellular swelling	0.0016	9	22.10	266	289
RRN3	RNA polymerase I specific transcription initiation factor RRN3	0.00018	10	20.60	267	306
Sigma70_ner	Sigma-70, non-essential region	0.0002	11	24.50	269	328