c2pfam

AT1G64550.1 :

Domain Description Evalue Bits GA Start End
ABC_tran ABC transporter 9.8E-21 66 23.10 194 368
AAA_7 P-loop containing dynein motor region 0.023 5 25.80 200 223
DUF87 Domain of unknown function DUF87 0.0075 7 20.90 200 225
AAA_30 AAA domain 0.0042 8 27.00 202 221
SMC_N RecF/RecN/SMC N terminal domain 0.00051 10 40.00 202 402
AAA_29 P-loop containing region of AAA domain 0.0063 7 27.00 202 217
RsgA_GTPase RsgA GTPase 0.18 3 30.00 202 223
AAA_24 AAA domain 0.0037 8 27.00 203 220
NTPase_1 NTPase 0.23 2 23.90 203 220
AAA_23 AAA domain 0.037 5 27.00 204 220
NB-ARC NB-ARC domain 0.066 3 23.50 204 220
MMR_HSR1 GTPase of unknown function 0.022 6 24.50 204 221
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00022 12 27.00 204 221
NACHT NACHT domain 0.00074 10 20.40 205 233
AAA_15 AAA ATPase domain 0.0029 8 32.10 205 220
AAA ATPase family associated with various cellular activities (AAA) 0.0016 10 20.80 205 274
AAA_22 AAA domain 0.0028 9 27.00 205 224
AAA_33 AAA domain 0.0081 7 27.00 205 224
AAA_28 AAA domain 0.00059 11 27.00 205 282
RNA_helicase RNA helicase 0.0038 9 21.50 205 259
AAA_16 AAA ATPase domain 0.0046 8 32.60 205 277
SRP54 SRP54-type protein, GTPase domain 0.01 6 20.50 205 223
AAA_18 AAA domain 0.015 7 29.40 205 258
AAA_25 AAA domain 0.001 10 27.00 205 231
AAA_5 AAA domain (dynein-related subfamily) 0.014 6 20.80 205 222
VirE Virulence-associated protein E 0.094 3 21.50 205 222
Roc Ras of Complex, Roc, domain of DAPkinase 0.1 4 27.00 205 222
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00069 10 27.00 349 394
DUF87 Domain of unknown function DUF87 0.93 0 20.90 396 467
ABC_tran_Xtn ABC transporter 5.9E-26 81 25.90 407 489
PhaP_Bmeg Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) 0.00049 11 22.20 407 461
AAA_15 AAA ATPase domain 0.94 0 32.10 415 457
AAA_15 AAA ATPase domain 7.5E-06 17 32.10 520 550
ABC_tran ABC transporter 6.6E-25 79 23.10 521 651
VirE Virulence-associated protein E 0.0026 8 21.50 521 552
AAA_29 P-loop containing region of AAA domain 0.00016 12 27.00 522 547
AAA_23 AAA domain 0.00016 13 27.00 527 550
AAA_25 AAA domain 0.15 3 27.00 529 547
AAA_7 P-loop containing dynein motor region 0.035 5 25.80 531 555
DUF87 Domain of unknown function DUF87 0.37 2 20.90 531 551
Roc Ras of Complex, Roc, domain of DAPkinase 0.03 6 27.00 532 551
SRP54 SRP54-type protein, GTPase domain 0.022 5 20.50 532 547
NB-ARC NB-ARC domain 0.0035 7 23.50 532 557
NACHT NACHT domain 0.0049 8 20.40 532 555
AAA_28 AAA domain 0.016 6 27.00 532 551
AAA_24 AAA domain 0.0022 9 27.00 532 550
RsgA_GTPase RsgA GTPase 0.00044 11 30.00 532 561
MMR_HSR1 GTPase of unknown function 0.0034 9 24.50 532 568
AAA_22 AAA domain 0.028 6 27.00 533 552
SMC_N RecF/RecN/SMC N terminal domain 0.00034 11 40.00 533 573
AAA_18 AAA domain 0.12 4 29.40 533 554
NTPase_1 NTPase 0.007 7 23.90 533 557
AAA_30 AAA domain 0.02 6 27.00 534 565
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 2.7E-05 15 27.00 534 552
AAA_33 AAA domain 0.004 8 27.00 534 572
RNA_helicase RNA helicase 0.0034 9 21.50 534 558
AAA_16 AAA ATPase domain 0.0042 8 32.60 535 561
AAA ATPase family associated with various cellular activities (AAA) 0.00065 11 20.80 535 648
AAA_5 AAA domain (dynein-related subfamily) 0.011 7 20.80 535 558
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 2.8E-05 15 27.00 611 668
SMC_N RecF/RecN/SMC N terminal domain 0.0023 8 40.00 622 665

715

ABC_tran
AAA_7
DUF87
AAA_30
SMC_N
AAA_29
RsgA_GTPase
AAA_24
NTPase_1
AAA_23
NB-ARC
MMR_HSR1
AAA_21
NACHT
AAA_15
AAA
AAA_22
AAA_33
AAA_28
RNA_helicase
AAA_16
SRP54
AAA_18
AAA_25
AAA_5
VirE
Roc
AAA_21
DUF87
ABC_tran_Xtn
PhaP_Bmeg
AAA_15
AAA_15
ABC_tran
VirE
AAA_29
AAA_23
AAA_25
AAA_7
DUF87
Roc
SRP54
NB-ARC
NACHT
AAA_28
AAA_24
RsgA_GTPase
MMR_HSR1
AAA_22
SMC_N
AAA_18
NTPase_1
AAA_30
AAA_21
AAA_33
RNA_helicase
AAA_16
AAA
AAA_5
AAA_21
SMC_N

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

ABC_tran_Xtn

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

VirE

NTPase_1

AAA_7

Roc

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

AAA_30

AAA_29

AAA_28

AAA_25

AAA_24

AAA_23

AAA_22

AAA_21

PhaP_Bmeg

AAA_18

AAA_16

AAA_15

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

RsgA_GTPase

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

DUF87

Domain	Description	Evalue	Bits	GA	Start	End
ABC_tran	ABC transporter	9.8E-21	66	23.10	194	368
AAA_7	P-loop containing dynein motor region	0.023	5	25.80	200	223
DUF87	Domain of unknown function DUF87	0.0075	7	20.90	200	225
AAA_30	AAA domain	0.0042	8	27.00	202	221
SMC_N	RecF/RecN/SMC N terminal domain	0.00051	10	40.00	202	402
AAA_29	P-loop containing region of AAA domain	0.0063	7	27.00	202	217
RsgA_GTPase	RsgA GTPase	0.18	3	30.00	202	223
AAA_24	AAA domain	0.0037	8	27.00	203	220
NTPase_1	NTPase	0.23	2	23.90	203	220
AAA_23	AAA domain	0.037	5	27.00	204	220
NB-ARC	NB-ARC domain	0.066	3	23.50	204	220
MMR_HSR1	GTPase of unknown function	0.022	6	24.50	204	221
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00022	12	27.00	204	221
NACHT	NACHT domain	0.00074	10	20.40	205	233
AAA_15	AAA ATPase domain	0.0029	8	32.10	205	220
AAA	ATPase family associated with various cellular activities (AAA)	0.0016	10	20.80	205	274
AAA_22	AAA domain	0.0028	9	27.00	205	224
AAA_33	AAA domain	0.0081	7	27.00	205	224
AAA_28	AAA domain	0.00059	11	27.00	205	282
RNA_helicase	RNA helicase	0.0038	9	21.50	205	259
AAA_16	AAA ATPase domain	0.0046	8	32.60	205	277
SRP54	SRP54-type protein, GTPase domain	0.01	6	20.50	205	223
AAA_18	AAA domain	0.015	7	29.40	205	258
AAA_25	AAA domain	0.001	10	27.00	205	231
AAA_5	AAA domain (dynein-related subfamily)	0.014	6	20.80	205	222
VirE	Virulence-associated protein E	0.094	3	21.50	205	222
Roc	Ras of Complex, Roc, domain of DAPkinase	0.1	4	27.00	205	222
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00069	10	27.00	349	394
DUF87	Domain of unknown function DUF87	0.93	0	20.90	396	467
ABC_tran_Xtn	ABC transporter	5.9E-26	81	25.90	407	489
PhaP_Bmeg	Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)	0.00049	11	22.20	407	461
AAA_15	AAA ATPase domain	0.94	0	32.10	415	457
AAA_15	AAA ATPase domain	7.5E-06	17	32.10	520	550
ABC_tran	ABC transporter	6.6E-25	79	23.10	521	651
VirE	Virulence-associated protein E	0.0026	8	21.50	521	552
AAA_29	P-loop containing region of AAA domain	0.00016	12	27.00	522	547
AAA_23	AAA domain	0.00016	13	27.00	527	550
AAA_25	AAA domain	0.15	3	27.00	529	547
AAA_7	P-loop containing dynein motor region	0.035	5	25.80	531	555
DUF87	Domain of unknown function DUF87	0.37	2	20.90	531	551
Roc	Ras of Complex, Roc, domain of DAPkinase	0.03	6	27.00	532	551
SRP54	SRP54-type protein, GTPase domain	0.022	5	20.50	532	547
NB-ARC	NB-ARC domain	0.0035	7	23.50	532	557
NACHT	NACHT domain	0.0049	8	20.40	532	555
AAA_28	AAA domain	0.016	6	27.00	532	551
AAA_24	AAA domain	0.0022	9	27.00	532	550
RsgA_GTPase	RsgA GTPase	0.00044	11	30.00	532	561
MMR_HSR1	GTPase of unknown function	0.0034	9	24.50	532	568
AAA_22	AAA domain	0.028	6	27.00	533	552
SMC_N	RecF/RecN/SMC N terminal domain	0.00034	11	40.00	533	573
AAA_18	AAA domain	0.12	4	29.40	533	554
NTPase_1	NTPase	0.007	7	23.90	533	557
AAA_30	AAA domain	0.02	6	27.00	534	565
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	2.7E-05	15	27.00	534	552
AAA_33	AAA domain	0.004	8	27.00	534	572
RNA_helicase	RNA helicase	0.0034	9	21.50	534	558
AAA_16	AAA ATPase domain	0.0042	8	32.60	535	561
AAA	ATPase family associated with various cellular activities (AAA)	0.00065	11	20.80	535	648
AAA_5	AAA domain (dynein-related subfamily)	0.011	7	20.80	535	558
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	2.8E-05	15	27.00	611	668
SMC_N	RecF/RecN/SMC N terminal domain	0.0023	8	40.00	622	665