c2pfam

AT1G65410.1 :

Domain Description Evalue Bits GA Start End
RsgA_GTPase RsgA GTPase 7.9E-05 12 30.00 96 134
ABC_tran ABC transporter 2.9E-33 105 23.10 100 255
AAA_29 P-loop containing region of AAA domain 1.8E-07 21 27.00 101 138
SMC_N RecF/RecN/SMC N terminal domain 6.2E-07 19 40.00 110 272
AAA_16 AAA ATPase domain 2.8E-05 14 32.60 111 146
Spore_IV_A Stage IV sporulation protein A (spore_IV_A) 0.0012 8 25.00 112 133
AAA_30 AAA domain 5.4E-05 13 27.00 112 142
AAA_22 AAA domain 0.00017 12 27.00 113 133
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.058 3 20.00 113 132
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 4.9E-06 16 27.00 114 136
Rad17 Rad17 cell cycle checkpoint protein 0.00021 11 19.70 114 136
AAA_5 AAA domain (dynein-related subfamily) 0.00021 11 20.80 115 137
RNA_helicase RNA helicase 0.00014 12 21.50 115 147
Spore_IV_A Stage IV sporulation protein A (spore_IV_A) 0.1 1 25.00 170 221
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00033 10 27.00 214 295
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.0014 8 20.00 246 296

345

RsgA_GTPase
ABC_tran
AAA_29
SMC_N
AAA_16
Spore_IV_A
AAA_30
AAA_22
RuvB_N
AAA_21
Rad17
AAA_5
RNA_helicase
Spore_IV_A
AAA_21
RuvB_N

References:

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_29

AAA_30

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Spore_IV_A

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_22

AAA_21

RsgA_GTPase

Domain	Description	Evalue	Bits	GA	Start	End
RsgA_GTPase	RsgA GTPase	7.9E-05	12	30.00	96	134
ABC_tran	ABC transporter	2.9E-33	105	23.10	100	255
AAA_29	P-loop containing region of AAA domain	1.8E-07	21	27.00	101	138
SMC_N	RecF/RecN/SMC N terminal domain	6.2E-07	19	40.00	110	272
AAA_16	AAA ATPase domain	2.8E-05	14	32.60	111	146
Spore_IV_A	Stage IV sporulation protein A (spore_IV_A)	0.0012	8	25.00	112	133
AAA_30	AAA domain	5.4E-05	13	27.00	112	142
AAA_22	AAA domain	0.00017	12	27.00	113	133
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.058	3	20.00	113	132
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	4.9E-06	16	27.00	114	136
Rad17	Rad17 cell cycle checkpoint protein	0.00021	11	19.70	114	136
AAA_5	AAA domain (dynein-related subfamily)	0.00021	11	20.80	115	137
RNA_helicase	RNA helicase	0.00014	12	21.50	115	147
Spore_IV_A	Stage IV sporulation protein A (spore_IV_A)	0.1	1	25.00	170	221
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00033	10	27.00	214	295
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.0014	8	20.00	246	296