c2pfam

AT1G66400.1 :

Domain Description Evalue Bits GA Start End
Uteroglobin Uteroglobin family 0.00021 12 24.80 7 57
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 1.6E-06 19 21.40 13 73
EF-hand_7 EF-hand domain pair 6.8E-17 52 30.00 14 77
EF-hand_1 EF hand 1.3E-11 34 25.40 15 40
EF-hand_8 EF-hand domain pair 1.8E-05 15 28.00 15 38
EF-hand_5 EF hand 8.3E-12 34 25.90 16 39
EF-hand_6 EF-hand domain 2.8E-10 30 25.00 16 41
EF-hand_4 Cytoskeletal-regulatory complex EF hand 0.00041 10 21.30 16 78
EF-hand_9 EF-hand domain 2.8E-06 18 37.00 18 75
CBAH Linear amide C-N hydrolases, choloylglycine hydrolase family 1.9E-05 14 20.20 20 107
Dockerin_1 Dockerin type I repeat 0.026 5 20.50 22 33
Dockerin_1 Dockerin type I repeat 0.00079 10 20.50 23 68
EF-hand_8 EF-hand domain pair 1E-09 28 28.00 34 77
DUF1497 Protein of unknown function (DUF1497) 0.034 5 20.00 44 63
UPF0154 Uncharacterised protein family (UPF0154) 0.77 0 20.90 46 57
EF-hand_1 EF hand 3.7E-11 32 25.40 51 76
EF-hand_5 EF hand 1.4E-07 21 25.90 53 74
EF-hand_6 EF-hand domain 1.2E-07 21 25.00 57 77
DUF3563 Protein of unknown function (DUF3563) 0.00031 11 26.90 72 102
DUF1497 Protein of unknown function (DUF1497) 0.005 7 20.00 78 121
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 2.4E-05 15 21.40 80 148
Uteroglobin Uteroglobin family 0.69 1 24.80 82 106
EF-hand_7 EF-hand domain pair 1.8E-18 57 30.00 90 151
EF-hand_6 EF-hand domain 3.2E-10 29 25.00 90 119
EF-hand_1 EF hand 1.1E-10 31 25.40 90 118
EF-hand_5 EF hand 6.3E-08 22 25.90 91 115
EF-hand_8 EF-hand domain pair 6.6E-05 13 28.00 94 117
EF-hand_9 EF-hand domain 1.1E-07 22 37.00 94 153
Dockerin_1 Dockerin type I repeat 0.001 9 20.50 96 118
UPF0154 Uncharacterised protein family (UPF0154) 0.00057 10 20.90 100 134
EF-hand_4 Cytoskeletal-regulatory complex EF hand 1.1E-05 16 21.30 102 152
EF-hand_8 EF-hand domain pair 5.9E-13 39 28.00 103 151
RNA_pol_Rpb4 RNA polymerase Rpb4 0.00049 11 21.60 106 135
EF-hand_1 EF hand 3.1E-11 32 25.40 126 152
EF-hand_5 EF hand 2.2E-07 20 25.90 130 151
EF-hand_6 EF-hand domain 7.1E-07 19 25.00 132 152
Dockerin_1 Dockerin type I repeat 0.73 0 20.50 133 142

157

Uteroglobin
SPARC_Ca_bdg
EF-hand_7
EF-hand_1
EF-hand_8
EF-hand_5
EF-hand_6
EF-hand_4
EF-hand_9
CBAH
Dockerin_1
Dockerin_1
EF-hand_8
DUF1497
UPF0154
EF-hand_1
EF-hand_5
EF-hand_6
DUF3563
DUF1497
SPARC_Ca_bdg
Uteroglobin
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_5
EF-hand_8
EF-hand_9
Dockerin_1
UPF0154
EF-hand_4
EF-hand_8
RNA_pol_Rpb4
EF-hand_1
EF-hand_5
EF-hand_6
Dockerin_1

References:

UPF0154

EF-hand_9

SPARC_Ca_bdg
16121393 The C-terminal Ca2+-binding domain of SPARC confers anti-spreading activity to human urothelial cells. J Cell Physiol. 2006;206:211-220.

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_4

DUF3563

EF-hand_1

EF-hand_8

Uteroglobin
7770456 Progesterone binding to uteroglobin: two alternative orientations of the ligand. Protein Eng 1995;8:71-79.

Dockerin_1
10390637 The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides [In Process Citation] Trends Microbiol 1999;7:275-281.
10898940 Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy. Arch Biochem Biophys 2000;379:237-244.

CBAH
7618863 Cloning and characterization of a conjugated bile acid hydrolase gene from Clostridium perfringens. Appl Environ Microbiol 1995;61:2514-2520.

RNA_pol_Rpb4
11741548 Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex. Mol Cell 2001;8:1137-1143.
12482973 An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP. Mol Cell Biol. 2003;23:195-205.
8065349 C25, an essential RNA polymerase III subunit related to the RNA polymerase II subunit RPB7. Mol Cell Biol. 1994;14:6164-6170.
12482973 An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP. Mol Cell Biol. 2003;23:195-205.
16818233 Structural biology of RNA polymerase III: subcomplex C17/25 X-ray structure and 11 subunit enzyme model. Mol Cell. 2006;23:71-81.

DUF1497

Domain	Description	Evalue	Bits	GA	Start	End
Uteroglobin	Uteroglobin family	0.00021	12	24.80	7	57
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	1.6E-06	19	21.40	13	73
EF-hand_7	EF-hand domain pair	6.8E-17	52	30.00	14	77
EF-hand_1	EF hand	1.3E-11	34	25.40	15	40
EF-hand_8	EF-hand domain pair	1.8E-05	15	28.00	15	38
EF-hand_5	EF hand	8.3E-12	34	25.90	16	39
EF-hand_6	EF-hand domain	2.8E-10	30	25.00	16	41
EF-hand_4	Cytoskeletal-regulatory complex EF hand	0.00041	10	21.30	16	78
EF-hand_9	EF-hand domain	2.8E-06	18	37.00	18	75
CBAH	Linear amide C-N hydrolases, choloylglycine hydrolase family	1.9E-05	14	20.20	20	107
Dockerin_1	Dockerin type I repeat	0.026	5	20.50	22	33
Dockerin_1	Dockerin type I repeat	0.00079	10	20.50	23	68
EF-hand_8	EF-hand domain pair	1E-09	28	28.00	34	77
DUF1497	Protein of unknown function (DUF1497)	0.034	5	20.00	44	63
UPF0154	Uncharacterised protein family (UPF0154)	0.77	0	20.90	46	57
EF-hand_1	EF hand	3.7E-11	32	25.40	51	76
EF-hand_5	EF hand	1.4E-07	21	25.90	53	74
EF-hand_6	EF-hand domain	1.2E-07	21	25.00	57	77
DUF3563	Protein of unknown function (DUF3563)	0.00031	11	26.90	72	102
DUF1497	Protein of unknown function (DUF1497)	0.005	7	20.00	78	121
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	2.4E-05	15	21.40	80	148
Uteroglobin	Uteroglobin family	0.69	1	24.80	82	106
EF-hand_7	EF-hand domain pair	1.8E-18	57	30.00	90	151
EF-hand_6	EF-hand domain	3.2E-10	29	25.00	90	119
EF-hand_1	EF hand	1.1E-10	31	25.40	90	118
EF-hand_5	EF hand	6.3E-08	22	25.90	91	115
EF-hand_8	EF-hand domain pair	6.6E-05	13	28.00	94	117
EF-hand_9	EF-hand domain	1.1E-07	22	37.00	94	153
Dockerin_1	Dockerin type I repeat	0.001	9	20.50	96	118
UPF0154	Uncharacterised protein family (UPF0154)	0.00057	10	20.90	100	134
EF-hand_4	Cytoskeletal-regulatory complex EF hand	1.1E-05	16	21.30	102	152
EF-hand_8	EF-hand domain pair	5.9E-13	39	28.00	103	151
RNA_pol_Rpb4	RNA polymerase Rpb4	0.00049	11	21.60	106	135
EF-hand_1	EF hand	3.1E-11	32	25.40	126	152
EF-hand_5	EF hand	2.2E-07	20	25.90	130	151
EF-hand_6	EF-hand domain	7.1E-07	19	25.00	132	152
Dockerin_1	Dockerin type I repeat	0.73	0	20.50	133	142