c2pfam

AT1G66620.1 :

Domain Description Evalue Bits GA Start End
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 3.3E-06 16 27.00 43 83
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 0.0029 7 27.00 44 79
Sina Seven in absentia protein family 1.1E-14 44 28.70 88 158
DUF2457 Protein of unknown function (DUF2457) 8.8E-05 11 30.00 267 312
Autophagy_act_C Autophagocytosis associated protein, active-site domain 1.6E-06 18 21.30 273 308
PPP4R2 PPP4R2 7.2E-05 12 25.00 275 313
RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc31 0.0018 8 22.80 275 310
Astro_capsid_p Turkey astrovirus capsid protein 0.00071 8 25.00 278 308
RXT2_N RXT2-like, N-terminal 0.00039 10 21.10 279 308
Sigma70_ner Sigma-70, non-essential region 0.00036 10 24.50 280 312

313

zf-C3HC4_3
zf-C3HC4_2
Sina
DUF2457
Autophagy_act_C
PPP4R2
RNA_pol_3_Rpc31
Astro_capsid_p
RXT2_N
Sigma70_ner

References:

PPP4R2
16857015 The Saccharomyces cerevisiae orthologue of the human protein phosphatase 4 core regulatory subunit R2 confers resistance to the anticancer drug cisplatin. FEBS J. 2006;273:3322-3334.

zf-C3HC4_3

zf-C3HC4_2

RXT2_N
10628851 Functional analysis of 150 deletion mutants in Saccharomyces cerevisiae by a systematic approach. Mol Gen Genet. 1999;262:683-702.
14562095 Global analysis of protein localization in budding yeast. Nature 2003;425:686-691.

RNA_pol_3_Rpc31
16877568 Ancient origin, functional conservation and fast evolution of DNA-dependent RNA polymerase III. Nucleic Acids Res. 2006;34:3615-3624.

Sigma70_ner
11931761 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 2002;9:527-539.
8858155 Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase. Cell 1996;87:127-136.

DUF2457

Autophagy_act_C
9023185 AUT1, a gene essential for autophagocytosis in the yeast Saccharomyces cerevisiae. J Bacteriol 1997;179:1068-1076.
12482611 Mouse Apg10 as an Apg12-conjugating enzyme: analysis by the conjugation-mediated yeast two-hybrid method. FEBS Lett. 2002;532:450-454.
17565192 Crystallization and preliminary X-ray analysis of Atg10. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007;63:443-445.

Astro_capsid_p
16404992 Molecular characterization of the capsid gene of two serotypes of turkey astroviruses. Avian Dis. 2005;49:514-519.

Sina
9403064 Characterization of human homologs of the Drosophila seven in absentia (sina) gene. Genomics 1997;46:103-111.
9267026 PHYL acts to down-regulate TTK88, a transcriptional repressor of neuronal cell fates, by a SINA-dependent mechanism. Cell 1997;90:459-467.
11389839 Siah-1, SIP, and Ebi collaborate in a novel pathway for beta-catenin degradation linked to p53 responses. Mol Cell 2001;7:915-926.

Domain	Description	Evalue	Bits	GA	Start	End
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	3.3E-06	16	27.00	43	83
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	0.0029	7	27.00	44	79
Sina	Seven in absentia protein family	1.1E-14	44	28.70	88	158
DUF2457	Protein of unknown function (DUF2457)	8.8E-05	11	30.00	267	312
Autophagy_act_C	Autophagocytosis associated protein, active-site domain	1.6E-06	18	21.30	273	308
PPP4R2	PPP4R2	7.2E-05	12	25.00	275	313
RNA_pol_3_Rpc31	DNA-directed RNA polymerase III subunit Rpc31	0.0018	8	22.80	275	310
Astro_capsid_p	Turkey astrovirus capsid protein	0.00071	8	25.00	278	308
RXT2_N	RXT2-like, N-terminal	0.00039	10	21.10	279	308
Sigma70_ner	Sigma-70, non-essential region	0.00036	10	24.50	280	312