c2pfam

AT1G67940.1 :

Domain Description Evalue Bits GA Start End
AAA_14 AAA domain 0.85 0 27.00 17 34
AAA_23 AAA domain 6.4E-05 14 27.00 43 75
AAA_15 AAA ATPase domain 3.8E-05 14 32.10 45 97
ABC_tran ABC transporter 2.1E-34 110 23.10 45 188
AAA_29 P-loop containing region of AAA domain 7.7E-07 19 27.00 48 83
Adeno_IVa2 Adenovirus IVa2 protein 1.4E-05 15 20.10 50 88
ABC_ATPase Predicted ATPase of the ABC class 0.0027 7 19.30 51 76
AAA_25 AAA domain 0.0021 8 27.00 52 75
AAA_14 AAA domain 0.00018 12 27.00 55 95
AAA_16 AAA ATPase domain 1.7E-06 19 32.60 56 95
SMC_N RecF/RecN/SMC N terminal domain 0.00087 9 40.00 56 75
AAA_24 AAA domain 3.7E-07 21 27.00 56 99
AAA_30 AAA domain 6.9E-06 16 27.00 56 87
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 2.3E-06 18 27.00 57 81
PRK Phosphoribulokinase / Uridine kinase family 9.2E-05 13 20.60 57 80
AAA_18 AAA domain 0.00011 13 29.40 58 78
AAA_22 AAA domain 6.1E-06 17 27.00 58 201
NACHT NACHT domain 2.7E-05 15 20.40 58 80
MMR_HSR1 GTPase of unknown function 0.0005 11 24.50 58 75
AAA_33 AAA domain 2.4E-05 15 27.00 59 76
ATP_bind_1 Conserved hypothetical ATP binding protein 7.9E-05 13 20.20 60 79
Cytidylate_kin Cytidylate kinase 0.0047 7 20.40 60 76
AAA_5 AAA domain (dynein-related subfamily) 0.00045 11 20.80 60 94
SMC_N RecF/RecN/SMC N terminal domain 9.1E-06 16 40.00 84 230
Cytidylate_kin Cytidylate kinase 0.023 5 20.40 132 231
AAA_14 AAA domain 0.14 3 27.00 167 221
ABC_ATPase Predicted ATPase of the ABC class 0.00065 9 19.30 168 237
AAA_25 AAA domain 0.12 2 27.00 168 221
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 3E-06 18 27.00 174 219
MMR_HSR1 GTPase of unknown function 0.098 3 24.50 215 236

263

AAA_14
AAA_23
AAA_15
ABC_tran
AAA_29
Adeno_IVa2
ABC_ATPase
AAA_25
AAA_14
AAA_16
SMC_N
AAA_24
AAA_30
AAA_21
PRK
AAA_18
AAA_22
NACHT
MMR_HSR1
AAA_33
ATP_bind_1
Cytidylate_kin
AAA_5
SMC_N
Cytidylate_kin
AAA_14
ABC_ATPase
AAA_25
AAA_21
MMR_HSR1

References:

AAA_16

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_33

ABC_ATPase

AAA_15

Cytidylate_kin
9862805 Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure 1998;6:1517-1527.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

PRK
9548738 The crystal structure of phosphoribulokinase from Rhodobacter sphaeroides reveals a fold similar to that of adenylate kinase. Biochemistry 1998;37:5074-5085.
17143579 Functional characterization of a gene encoding a dual domain for uridine kinase and uracil phosphoribosyltransferase in Arabidopsis thaliana. Plant Mol Biol. 2007;63:465-477.

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

ATP_bind_1

Adeno_IVa2
10684284 Interaction of the adenovirus IVa2 protein with viral packaging sequences. J Virol 2000;74:2687-2693.
8207818 The product of the adenovirus intermediate gene IVa2 is a transcriptional activator of the major late promoter. J Virol 1994;68:4450-4457.

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

AAA_29

AAA_25

AAA_24

AAA_23

AAA_22

AAA_21

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
AAA_14	AAA domain	0.85	0	27.00	17	34
AAA_23	AAA domain	6.4E-05	14	27.00	43	75
AAA_15	AAA ATPase domain	3.8E-05	14	32.10	45	97
ABC_tran	ABC transporter	2.1E-34	110	23.10	45	188
AAA_29	P-loop containing region of AAA domain	7.7E-07	19	27.00	48	83
Adeno_IVa2	Adenovirus IVa2 protein	1.4E-05	15	20.10	50	88
ABC_ATPase	Predicted ATPase of the ABC class	0.0027	7	19.30	51	76
AAA_25	AAA domain	0.0021	8	27.00	52	75
AAA_14	AAA domain	0.00018	12	27.00	55	95
AAA_16	AAA ATPase domain	1.7E-06	19	32.60	56	95
SMC_N	RecF/RecN/SMC N terminal domain	0.00087	9	40.00	56	75
AAA_24	AAA domain	3.7E-07	21	27.00	56	99
AAA_30	AAA domain	6.9E-06	16	27.00	56	87
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	2.3E-06	18	27.00	57	81
PRK	Phosphoribulokinase / Uridine kinase family	9.2E-05	13	20.60	57	80
AAA_18	AAA domain	0.00011	13	29.40	58	78
AAA_22	AAA domain	6.1E-06	17	27.00	58	201
NACHT	NACHT domain	2.7E-05	15	20.40	58	80
MMR_HSR1	GTPase of unknown function	0.0005	11	24.50	58	75
AAA_33	AAA domain	2.4E-05	15	27.00	59	76
ATP_bind_1	Conserved hypothetical ATP binding protein	7.9E-05	13	20.20	60	79
Cytidylate_kin	Cytidylate kinase	0.0047	7	20.40	60	76
AAA_5	AAA domain (dynein-related subfamily)	0.00045	11	20.80	60	94
SMC_N	RecF/RecN/SMC N terminal domain	9.1E-06	16	40.00	84	230
Cytidylate_kin	Cytidylate kinase	0.023	5	20.40	132	231
AAA_14	AAA domain	0.14	3	27.00	167	221
ABC_ATPase	Predicted ATPase of the ABC class	0.00065	9	19.30	168	237
AAA_25	AAA domain	0.12	2	27.00	168	221
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	3E-06	18	27.00	174	219
MMR_HSR1	GTPase of unknown function	0.098	3	24.50	215	236