c2pfam

AT1G06670.1 :

Domain Description Evalue Bits GA Start End
R3H R3H domain 1.9E-11 34 20.40 23 76
Sigma54_activ_2 Sigma-54 interaction domain 0.00042 10 25.00 218 254
PhoH PhoH-like protein 8.1E-05 12 20.10 225 274
DEAD DEAD/DEAH box helicase 2.7E-13 40 20.60 225 379
AAA_19 AAA domain 5.6E-06 17 25.10 228 366
AAA_7 P-loop containing dynein motor region 0.00012 12 25.80 229 266
ATPase KaiC 2.7E-05 14 26.60 230 257
AAA_22 AAA domain 9E-06 16 27.00 232 373
SRP54 SRP54-type protein, GTPase domain 0.00055 10 20.50 234 279
Ank_2 Ankyrin repeats (3 copies) 4.2E-07 21 27.30 453 534
Ank_5 Ankyrin repeats (many copies) 3.6E-07 20 27.00 474 515
Helicase_C Helicase conserved C-terminal domain 5.9E-19 58 20.90 567 694
HA2 Helicase associated domain (HA2) 2.3E-18 57 21.30 759 872
SRP54 SRP54-type protein, GTPase domain 0.98 -1 20.50 862 887
OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 1E-10 32 29.50 919 1007

1576

R3H
Sigma54_activ_2
PhoH
DEAD
AAA_19
AAA_7
ATPase
AAA_22
SRP54
Ank_2
Ank_5
Helicase_C
HA2
SRP54
OB_NTP_bind

References:

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

OB_NTP_bind

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

HA2

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

Ank_5

Ank_2

Helicase_C

AAA_7

ATPase

Sigma54_activ_2

AAA_22

AAA_19

R3H
9787637 The R3H motif: a domain that binds single-stranded nucleic acids. Trends Biochem Sci 1998;23:329-330.

Domain	Description	Evalue	Bits	GA	Start	End
R3H	R3H domain	1.9E-11	34	20.40	23	76
Sigma54_activ_2	Sigma-54 interaction domain	0.00042	10	25.00	218	254
PhoH	PhoH-like protein	8.1E-05	12	20.10	225	274
DEAD	DEAD/DEAH box helicase	2.7E-13	40	20.60	225	379
AAA_19	AAA domain	5.6E-06	17	25.10	228	366
AAA_7	P-loop containing dynein motor region	0.00012	12	25.80	229	266
ATPase	KaiC	2.7E-05	14	26.60	230	257
AAA_22	AAA domain	9E-06	16	27.00	232	373
SRP54	SRP54-type protein, GTPase domain	0.00055	10	20.50	234	279
Ank_2	Ankyrin repeats (3 copies)	4.2E-07	21	27.30	453	534
Ank_5	Ankyrin repeats (many copies)	3.6E-07	20	27.00	474	515
Helicase_C	Helicase conserved C-terminal domain	5.9E-19	58	20.90	567	694
HA2	Helicase associated domain (HA2)	2.3E-18	57	21.30	759	872
SRP54	SRP54-type protein, GTPase domain	0.98	-1	20.50	862	887
OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	1E-10	32	29.50	919	1007