c2pfam

AT1G06720.1 :

Domain Description Evalue Bits GA Start End
NACHT NACHT domain 6.4E-05 13 20.40 85 116
AAA_30 AAA domain 0.00015 11 27.00 85 111
ABC_tran ABC transporter 0.0034 8 23.10 85 110
AAA_16 AAA ATPase domain 4.7E-06 17 32.60 85 129
RNA_helicase RNA helicase 3.1E-05 14 21.50 86 111
AAA_22 AAA domain 2.7E-06 17 27.00 86 141
AAA ATPase family associated with various cellular activities (AAA) 3.2E-06 17 20.80 87 121
GTP_EFTU Elongation factor Tu GTP binding domain 3.3E-07 20 20.20 124 210
AARP2CN AARP2CN (NUC121) domain 1.5E-30 95 20.60 232 317
RIBIOP_C 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 0 290 25.80 710 981
Porph_ging Protein of unknown function (Porph_ging) 0.089 3 25.00 950 984
Porph_ging Protein of unknown function (Porph_ging) 0.49 1 25.00 1101 1138

1147

NACHT
AAA_30
ABC_tran
AAA_16
RNA_helicase
AAA_22
AAA
GTP_EFTU
AARP2CN
RIBIOP_C
Porph_ging
Porph_ging

References:

AAA_16

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

RIBIOP_C

AAA_30

Porph_ging

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_22

AARP2CN
15112237 Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. Bioessays 2004;26:567-581.

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

Domain	Description	Evalue	Bits	GA	Start	End
NACHT	NACHT domain	6.4E-05	13	20.40	85	116
AAA_30	AAA domain	0.00015	11	27.00	85	111
ABC_tran	ABC transporter	0.0034	8	23.10	85	110
AAA_16	AAA ATPase domain	4.7E-06	17	32.60	85	129
RNA_helicase	RNA helicase	3.1E-05	14	21.50	86	111
AAA_22	AAA domain	2.7E-06	17	27.00	86	141
AAA	ATPase family associated with various cellular activities (AAA)	3.2E-06	17	20.80	87	121
GTP_EFTU	Elongation factor Tu GTP binding domain	3.3E-07	20	20.20	124	210
AARP2CN	AARP2CN (NUC121) domain	1.5E-30	95	20.60	232	317
RIBIOP_C	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal	0	290	25.80	710	981
Porph_ging	Protein of unknown function (Porph_ging)	0.089	3	25.00	950	984
Porph_ging	Protein of unknown function (Porph_ging)	0.49	1	25.00	1101	1138