c2pfam

AT1G68930.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.4 1 30.00 39 65
PPR PPR repeat 0.064 4 25.00 43 67
PPR_3 Pentatricopeptide repeat domain 0.00043 10 25.00 43 82
Type_III_YscG Bacterial type II secretion system chaperone protein (type_III_yscG) 0.0018 8 26.10 47 102
PPR_1 PPR repeat 0.18 1 23.80 69 90
PPR_2 PPR repeat family 0.00042 10 30.00 70 100
PPR PPR repeat 3.2E-06 17 25.00 73 100
TPR_8 Tetratricopeptide repeat 0.0096 6 25.70 74 97
BTAD Bacterial transcriptional activator domain 0.029 4 21.00 87 136
PPR_1 PPR repeat 5.6E-05 13 23.80 102 129
PPR_2 PPR repeat family 1.3E-06 18 30.00 103 146
PPR PPR repeat 1.1E-06 18 25.00 104 131
PPR_long Pentacotripeptide-repeat region of PRORP 0.5 -1 27.00 123 184
PPR PPR repeat 1 0 25.00 140 170
PPR PPR repeat 0.19 2 25.00 180 198
PPR_2 PPR repeat family 4E-09 26 30.00 203 236
PPR_1 PPR repeat 2E-06 17 23.80 204 232
PPR_3 Pentatricopeptide repeat domain 0.0093 6 25.00 204 236
BTAD Bacterial transcriptional activator domain 0.023 5 21.00 205 231
PPR PPR repeat 1.1E-08 25 25.00 206 235
PPR_3 Pentatricopeptide repeat domain 0.00046 10 25.00 229 282
PPR_1 PPR repeat 4.1E-08 23 23.80 229 262
PPR_2 PPR repeat family 4.7E-11 32 30.00 233 280
PPR PPR repeat 3.4E-10 29 25.00 236 265
BTAD Bacterial transcriptional activator domain 0.31 1 21.00 237 262
TPR_14 Tetratricopeptide repeat 0.022 6 23.50 238 260
PPR_long Pentacotripeptide-repeat region of PRORP 0.00045 9 27.00 246 371
TPR_8 Tetratricopeptide repeat 0.46 1 25.70 247 260
AEP1 ATPase expression protein 1 0.00036 9 27.00 299 346
PPR_3 Pentatricopeptide repeat domain 0.00042 10 25.00 299 336
PPR PPR repeat 2.8E-07 20 25.00 309 336
PPR_2 PPR repeat family 0.00014 12 30.00 310 336
PPR_1 PPR repeat 0.00011 12 23.80 310 332
PPR_3 Pentatricopeptide repeat domain 4.1E-05 13 25.00 334 381
PPR_2 PPR repeat family 3.8E-14 42 30.00 334 382
PPR_1 PPR repeat 0.0001 12 23.80 335 362
PPR PPR repeat 1.2E-10 31 25.00 337 367
TPR_14 Tetratricopeptide repeat 0.99 0 23.50 339 364
TPR_8 Tetratricopeptide repeat 0.13 3 25.70 346 359
AEP1 ATPase expression protein 1 0.16 1 27.00 393 447
PPR_2 PPR repeat family 0.00061 10 30.00 409 434
PPR PPR repeat 3.7E-06 17 25.00 410 433
PPR_1 PPR repeat 4.2E-05 13 23.80 410 432
BTAD Bacterial transcriptional activator domain 0.08 3 21.00 423 465
PPR_1 PPR repeat 1.8E-05 14 23.80 436 464
PPR_2 PPR repeat family 5.6E-12 35 30.00 436 483
PPR PPR repeat 4.9E-09 26 25.00 438 468
TPR_14 Tetratricopeptide repeat 0.06 4 23.50 440 471
PPR_long Pentacotripeptide-repeat region of PRORP 1.2E-05 14 27.00 453 529
PPR_3 Pentatricopeptide repeat domain 1.6E-07 21 25.00 459 518
PPR_1 PPR repeat 4.4E-05 13 23.80 467 498
PPR PPR repeat 3.3E-06 17 25.00 473 500
PPR_1 PPR repeat 1.3E-07 21 23.80 503 534
PPR_2 PPR repeat family 2.3E-06 17 30.00 507 550
PPR PPR repeat 8.2E-07 19 25.00 511 534
TPR_14 Tetratricopeptide repeat 0.46 1 23.50 513 530
Type_III_YscG Bacterial type II secretion system chaperone protein (type_III_yscG) 0.1 2 26.10 520 547
PPR_1 PPR repeat 0.25 1 23.80 537 555
PPR_3 Pentatricopeptide repeat domain 0.0082 6 25.00 538 557
PPR_2 PPR repeat family 0.1 3 30.00 538 557
PPR PPR repeat 0.047 4 25.00 543 557
TPR_14 Tetratricopeptide repeat 0.0032 8 23.50 543 581
TPR_8 Tetratricopeptide repeat 0.063 4 25.70 543 573
TPR_8 Tetratricopeptide repeat 0.61 0 25.70 577 589
PPR PPR repeat 0.0013 9 25.00 577 605
PPR_2 PPR repeat family 0.25 1 30.00 579 606
DYW_deaminase DYW family of nucleic acid deaminases 0 123 31.60 609 733

743

PPR_2
PPR
PPR_3
Type_III_YscG
PPR_1
PPR_2
PPR
TPR_8
BTAD
PPR_1
PPR_2
PPR
PPR_long
PPR
PPR
PPR_2
PPR_1
PPR_3
BTAD
PPR
PPR_3
PPR_1
PPR_2
PPR
BTAD
TPR_14
PPR_long
TPR_8
AEP1
PPR_3
PPR
PPR_2
PPR_1
PPR_3
PPR_2
PPR_1
PPR
TPR_14
TPR_8
AEP1
PPR_2
PPR
PPR_1
BTAD
PPR_1
PPR_2
PPR
TPR_14
PPR_long
PPR_3
PPR_1
PPR
PPR_1
PPR_2
PPR
TPR_14
Type_III_YscG
PPR_1
PPR_3
PPR_2
PPR
TPR_14
TPR_8
TPR_8
PPR
PPR_2
DYW_deaminase

References:

TPR_8

DYW_deaminase

AEP1

TPR_14

PPR_long

Type_III_YscG

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.4	1	30.00	39	65
PPR	PPR repeat	0.064	4	25.00	43	67
PPR_3	Pentatricopeptide repeat domain	0.00043	10	25.00	43	82
Type_III_YscG	Bacterial type II secretion system chaperone protein (type_III_yscG)	0.0018	8	26.10	47	102
PPR_1	PPR repeat	0.18	1	23.80	69	90
PPR_2	PPR repeat family	0.00042	10	30.00	70	100
PPR	PPR repeat	3.2E-06	17	25.00	73	100
TPR_8	Tetratricopeptide repeat	0.0096	6	25.70	74	97
BTAD	Bacterial transcriptional activator domain	0.029	4	21.00	87	136
PPR_1	PPR repeat	5.6E-05	13	23.80	102	129
PPR_2	PPR repeat family	1.3E-06	18	30.00	103	146
PPR	PPR repeat	1.1E-06	18	25.00	104	131
PPR_long	Pentacotripeptide-repeat region of PRORP	0.5	-1	27.00	123	184
PPR	PPR repeat	1	0	25.00	140	170
PPR	PPR repeat	0.19	2	25.00	180	198
PPR_2	PPR repeat family	4E-09	26	30.00	203	236
PPR_1	PPR repeat	2E-06	17	23.80	204	232
PPR_3	Pentatricopeptide repeat domain	0.0093	6	25.00	204	236
BTAD	Bacterial transcriptional activator domain	0.023	5	21.00	205	231
PPR	PPR repeat	1.1E-08	25	25.00	206	235
PPR_3	Pentatricopeptide repeat domain	0.00046	10	25.00	229	282
PPR_1	PPR repeat	4.1E-08	23	23.80	229	262
PPR_2	PPR repeat family	4.7E-11	32	30.00	233	280
PPR	PPR repeat	3.4E-10	29	25.00	236	265
BTAD	Bacterial transcriptional activator domain	0.31	1	21.00	237	262
TPR_14	Tetratricopeptide repeat	0.022	6	23.50	238	260
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00045	9	27.00	246	371
TPR_8	Tetratricopeptide repeat	0.46	1	25.70	247	260
AEP1	ATPase expression protein 1	0.00036	9	27.00	299	346
PPR_3	Pentatricopeptide repeat domain	0.00042	10	25.00	299	336
PPR	PPR repeat	2.8E-07	20	25.00	309	336
PPR_2	PPR repeat family	0.00014	12	30.00	310	336
PPR_1	PPR repeat	0.00011	12	23.80	310	332
PPR_3	Pentatricopeptide repeat domain	4.1E-05	13	25.00	334	381
PPR_2	PPR repeat family	3.8E-14	42	30.00	334	382
PPR_1	PPR repeat	0.0001	12	23.80	335	362
PPR	PPR repeat	1.2E-10	31	25.00	337	367
TPR_14	Tetratricopeptide repeat	0.99	0	23.50	339	364
TPR_8	Tetratricopeptide repeat	0.13	3	25.70	346	359
AEP1	ATPase expression protein 1	0.16	1	27.00	393	447
PPR_2	PPR repeat family	0.00061	10	30.00	409	434
PPR	PPR repeat	3.7E-06	17	25.00	410	433
PPR_1	PPR repeat	4.2E-05	13	23.80	410	432
BTAD	Bacterial transcriptional activator domain	0.08	3	21.00	423	465
PPR_1	PPR repeat	1.8E-05	14	23.80	436	464
PPR_2	PPR repeat family	5.6E-12	35	30.00	436	483
PPR	PPR repeat	4.9E-09	26	25.00	438	468
TPR_14	Tetratricopeptide repeat	0.06	4	23.50	440	471
PPR_long	Pentacotripeptide-repeat region of PRORP	1.2E-05	14	27.00	453	529
PPR_3	Pentatricopeptide repeat domain	1.6E-07	21	25.00	459	518
PPR_1	PPR repeat	4.4E-05	13	23.80	467	498
PPR	PPR repeat	3.3E-06	17	25.00	473	500
PPR_1	PPR repeat	1.3E-07	21	23.80	503	534
PPR_2	PPR repeat family	2.3E-06	17	30.00	507	550
PPR	PPR repeat	8.2E-07	19	25.00	511	534
TPR_14	Tetratricopeptide repeat	0.46	1	23.50	513	530
Type_III_YscG	Bacterial type II secretion system chaperone protein (type_III_yscG)	0.1	2	26.10	520	547
PPR_1	PPR repeat	0.25	1	23.80	537	555
PPR_3	Pentatricopeptide repeat domain	0.0082	6	25.00	538	557
PPR_2	PPR repeat family	0.1	3	30.00	538	557
PPR	PPR repeat	0.047	4	25.00	543	557
TPR_14	Tetratricopeptide repeat	0.0032	8	23.50	543	581
TPR_8	Tetratricopeptide repeat	0.063	4	25.70	543	573
TPR_8	Tetratricopeptide repeat	0.61	0	25.70	577	589
PPR	PPR repeat	0.0013	9	25.00	577	605
PPR_2	PPR repeat family	0.25	1	30.00	579	606
DYW_deaminase	DYW family of nucleic acid deaminases	0	123	31.60	609	733