c2pfam

AT1G69120.1 :

Domain Description Evalue Bits GA Start End
SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) 8.4E-29 89 20.40 10 57
ABC_transp_aux ABC-type uncharacterized transport system 0.17 1 23.00 42 89
DUF3584 Protein of unknown function (DUF3584) 3.1E-05 11 28.40 61 189
OmpH Outer membrane protein (OmpH-like) 0.00045 10 28.70 63 147
K-box K-box region 2.1E-33 104 20.60 84 172
FapA Flagellar Assembly Protein A 0.0077 4 36.70 89 182
Prominin Prominin 0.0026 5 31.00 92 184
DUF2115 Uncharacterized protein conserved in archaea (DUF2115) 0.00032 11 25.00 103 191
ATP-synt_G Mitochondrial ATP synthase g subunit 0.00085 10 25.00 103 159
ABC_transp_aux ABC-type uncharacterized transport system 0.00045 9 23.00 114 176
Sec2p GDP/GTP exchange factor Sec2p 0.64 0 22.30 123 146
FliD_C Flagellar hook-associated protein 2 C-terminus 0.0015 8 25.40 126 188
OmpH Outer membrane protein (OmpH-like) 0.72 0 28.70 129 188
Sec2p GDP/GTP exchange factor Sec2p 0.018 5 22.30 155 186
ATP-synt_G Mitochondrial ATP synthase g subunit 0.22 2 25.00 170 211

256

SRF-TF
ABC_transp_aux
DUF3584
OmpH
K-box
FapA
Prominin
DUF2115
ATP-synt_G
ABC_transp_aux
Sec2p
FliD_C
OmpH
Sec2p
ATP-synt_G

References:

SRF-TF

Prominin
11467842 Rat prominin, like its mouse and human orthologues, is a pentaspan membrane glycoprotein. Biochem Biophys Res Commun 2001;285:939-944.
10587575 A frameshift mutation in prominin (mouse)-like 1 causes human retinal degeneration. Hum Mol Genet 2000;9:27-34.

FliD_C
8195064 The Bacillus subtilis sigma D-dependent operon encoding the flagellar proteins FliD, FliS, and FliT. J Bacteriol 1994;176:3093-3101.
9488388 The Pseudomonas aeruginosa flagellar cap protein, FliD, is responsible for mucin adhesion. Infect Immun 1998;66:1000-1007.
11230454 Molecular characterization of fliD gene encoding flagellar cap and its expression among Clostridium difficile isolates from different serogroups. J Clin Microbiol 2001;39:1178-1183.

DUF3584

DUF2115

FapA

ABC_transp_aux

ATP-synt_G
8011660 Fo membrane domain of ATP synthase from bovine heart mitochondria: purification, subunit composition, and reconstitution with F1-ATPase. Biochemistry 1994;33:7971-7978.

Sec2p
9199166 Sec2p mediates nucleotide exchange on Sec4p and is involved in polarized delivery of post-Golgi vesicles. J Cell Biol 1997;137:1495-1509.

K-box
7958839 Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA. Genes Dev 1994;8:1548-1560.
2031185 Predicting coiled coils from protein sequences. Science 1991;252:1162-1164.

OmpH
2318304 Bacterial 'histone-like protein I' (HLP-I) is an outer membrane constituent? FEBS Lett 1990;262:123-126.
15304217 Crystal structure of Skp, a prefoldin-like chaperone that protects soluble and membrane proteins from aggregation. Mol Cell 2004;15:367-374.

Domain	Description	Evalue	Bits	GA	Start	End
SRF-TF	SRF-type transcription factor (DNA-binding and dimerisation domain)	8.4E-29	89	20.40	10	57
ABC_transp_aux	ABC-type uncharacterized transport system	0.17	1	23.00	42	89
DUF3584	Protein of unknown function (DUF3584)	3.1E-05	11	28.40	61	189
OmpH	Outer membrane protein (OmpH-like)	0.00045	10	28.70	63	147
K-box	K-box region	2.1E-33	104	20.60	84	172
FapA	Flagellar Assembly Protein A	0.0077	4	36.70	89	182
Prominin	Prominin	0.0026	5	31.00	92	184
DUF2115	Uncharacterized protein conserved in archaea (DUF2115)	0.00032	11	25.00	103	191
ATP-synt_G	Mitochondrial ATP synthase g subunit	0.00085	10	25.00	103	159
ABC_transp_aux	ABC-type uncharacterized transport system	0.00045	9	23.00	114	176
Sec2p	GDP/GTP exchange factor Sec2p	0.64	0	22.30	123	146
FliD_C	Flagellar hook-associated protein 2 C-terminus	0.0015	8	25.40	126	188
OmpH	Outer membrane protein (OmpH-like)	0.72	0	28.70	129	188
Sec2p	GDP/GTP exchange factor Sec2p	0.018	5	22.30	155	186
ATP-synt_G	Mitochondrial ATP synthase g subunit	0.22	2	25.00	170	211