c2pfam

AT1G69180.1 :

Domain Description Evalue Bits GA Start End
Tmemb_55A Transmembrane protein 55A 4.2E-05 13 30.00 4 65
YABBY YABBY protein 0 162 21.00 18 156
Elf1 Transcription elongation factor Elf1 like 7.4E-06 16 25.30 22 67
zinc_ribbon_12 Probable zinc-ribbon domain 0.00012 12 21.10 23 55
zinc_ribbon_4 zinc-ribbon domain 0.067 3 30.30 24 32
zf-ribbon_3 zinc-ribbon domain 0.01 5 27.00 24 33
zf-LSD1 LSD1 zinc finger 0.00012 12 20.20 24 32
zinc_ribbon_5 zinc-ribbon domain 0.11 2 29.30 24 32
Mu-like_Com Mu-like prophage protein Com 1.4E-06 18 21.60 24 60
zinc_ribbon_4 zinc-ribbon domain 0.0032 7 30.30 45 55
zinc_ribbon_5 zinc-ribbon domain 0.00072 9 29.30 46 55
zf-ribbon_3 zinc-ribbon domain 0.0096 5 27.00 48 55
zf-LSD1 LSD1 zinc finger 0.044 4 20.20 49 54
DUF2457 Protein of unknown function (DUF2457) 0.0031 6 30.00 81 142
Tmemb_55A Transmembrane protein 55A 0.26 0 30.00 86 105
Ccdc124 Coiled-coil domain-containing protein 124 /Oxs1 7.2E-05 13 21.30 112 156
HMG_box_2 HMG-box domain 6.8E-08 23 22.40 112 154
HMG_box HMG (high mobility group) box 3.5E-06 17 24.80 117 154

181

Tmemb_55A
YABBY
Elf1
zinc_ribbon_12
zinc_ribbon_4
zf-ribbon_3
zf-LSD1
zinc_ribbon_5
Mu-like_Com
zinc_ribbon_4
zinc_ribbon_5
zf-ribbon_3
zf-LSD1
DUF2457
Tmemb_55A
Ccdc124
HMG_box_2
HMG_box

References:

HMG_box_2

zf-LSD1
9054508 A novel zinc finger protein is encoded by the Arabidopsis LSD1 gene and functions as a negative regulator of plant cell death. Cell 1997;88:685-694.
12732715 Antagonistic control of oxidative stress-induced cell death in Arabidopsis by two related, plant-specific zinc finger proteins. Proc Natl Acad Sci U S A 2003;100:6831-6836.

Ccdc124

Tmemb_55A
16365287 The identification and characterization of two phosphatidylinositol-4,5-bisphosphate 4-phosphatases. Proc Natl Acad Sci U S A. 2005;102:18854-18859.

HMG_box

zinc_ribbon_5

zinc_ribbon_4

Elf1
16260625 Identification and characterization of Elf1, a conserved transcription elongation factor in Saccharomyces cerevisiae. Mol Cell Biol 2005;25:10122-10135.

DUF2457

zinc_ribbon_12

Mu-like_Com
6345072 Methylation regulates the expression of a DNA-modification function encoded by bacteriophage Mu. Cold Spring Harb Symp Quant Biol. 1983;47:639-646.
11922669 Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J Mol Biol. 2002;317:337-359.

zf-ribbon_3

YABBY
10679447 The YABBY gene family and abaxial cell fate. Curr Opin Plant Biol 2000;3:17-22.
11858837 Establishment of polarity in angiosperm lateral organs. Trends Genet 2002;18:134-141.

Domain	Description	Evalue	Bits	GA	Start	End
Tmemb_55A	Transmembrane protein 55A	4.2E-05	13	30.00	4	65
YABBY	YABBY protein	0	162	21.00	18	156
Elf1	Transcription elongation factor Elf1 like	7.4E-06	16	25.30	22	67
zinc_ribbon_12	Probable zinc-ribbon domain	0.00012	12	21.10	23	55
zinc_ribbon_4	zinc-ribbon domain	0.067	3	30.30	24	32
zf-ribbon_3	zinc-ribbon domain	0.01	5	27.00	24	33
zf-LSD1	LSD1 zinc finger	0.00012	12	20.20	24	32
zinc_ribbon_5	zinc-ribbon domain	0.11	2	29.30	24	32
Mu-like_Com	Mu-like prophage protein Com	1.4E-06	18	21.60	24	60
zinc_ribbon_4	zinc-ribbon domain	0.0032	7	30.30	45	55
zinc_ribbon_5	zinc-ribbon domain	0.00072	9	29.30	46	55
zf-ribbon_3	zinc-ribbon domain	0.0096	5	27.00	48	55
zf-LSD1	LSD1 zinc finger	0.044	4	20.20	49	54
DUF2457	Protein of unknown function (DUF2457)	0.0031	6	30.00	81	142
Tmemb_55A	Transmembrane protein 55A	0.26	0	30.00	86	105
Ccdc124	Coiled-coil domain-containing protein 124 /Oxs1	7.2E-05	13	21.30	112	156
HMG_box_2	HMG-box domain	6.8E-08	23	22.40	112	154
HMG_box	HMG (high mobility group) box	3.5E-06	17	24.80	117	154