c2pfam

AT4G19191.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 1.8E-09 27 30.00 16 64
PPR PPR repeat 0.0058 7 25.00 30 48
PPR_3 Pentatricopeptide repeat domain 0.0044 7 25.00 39 62
PPR_long Pentacotripeptide-repeat region of PRORP 0.0082 5 27.00 39 75
PPR_1 PPR repeat 0.77 -1 23.80 47 55
PPR_2 PPR repeat family 0.0092 6 30.00 86 116
PPR PPR repeat 0.0025 8 25.00 94 116
PPR_long Pentacotripeptide-repeat region of PRORP 0.0003 9 27.00 94 161
PPR_1 PPR repeat 0.016 4 23.80 99 113
PPR_1 PPR repeat 2E-12 36 23.80 116 145
PPR_3 Pentatricopeptide repeat domain 1.9E-05 14 25.00 117 155
PPR_2 PPR repeat family 4.3E-16 48 30.00 117 162
PPR PPR repeat 2.3E-12 36 25.00 120 147
TPR_14 Tetratricopeptide repeat 0.26 2 23.50 121 144
PPR_1 PPR repeat 0.14 1 23.80 148 161
PPR_3 Pentatricopeptide repeat domain 0.24 1 25.00 181 231
PPR_2 PPR repeat family 0.037 4 30.00 188 212
PPR PPR repeat 0.00011 12 25.00 192 212
PPR_1 PPR repeat 0.0051 6 23.80 192 212
TPR_8 Tetratricopeptide repeat 0.048 4 25.70 196 212
PPR_2 PPR repeat family 6.4E-08 22 30.00 220 260
PPR_3 Pentatricopeptide repeat domain 0.28 1 25.00 221 259
PPR PPR repeat 2.4E-07 20 25.00 222 250
PPR_2 PPR repeat family 0.001 9 30.00 290 322
PPR PPR repeat 0.042 4 25.00 295 320
PPR_1 PPR repeat 4.3E-08 22 23.80 321 348
PPR_3 Pentatricopeptide repeat domain 2.4E-05 14 25.00 323 369
PPR PPR repeat 3.8E-12 35 25.00 323 352
PPR_2 PPR repeat family 1.6E-14 43 30.00 323 368
PPR_long Pentacotripeptide-repeat region of PRORP 0.024 3 27.00 326 383
TPR_14 Tetratricopeptide repeat 0.0017 9 23.50 327 359
TPR_2 Tetratricopeptide repeat 0.043 4 22.40 332 349
TPR_8 Tetratricopeptide repeat 0.28 1 25.70 332 344
TPR_19 Tetratricopeptide repeat 0.1 3 25.00 334 349
PPR_1 PPR repeat 0.0021 7 23.80 352 374
PPR PPR repeat 0.0059 6 25.00 358 375
TPR_19 Tetratricopeptide repeat 0.32 1 25.00 391 422
PPR_2 PPR repeat family 7E-06 16 30.00 392 417
PPR_3 Pentatricopeptide repeat domain 0.016 5 25.00 392 421
PPR PPR repeat 2.4E-06 17 25.00 396 417
PPR_1 PPR repeat 0.00084 9 23.80 397 417
PPR_2 PPR repeat family 7.7E-13 38 30.00 422 470
PPR_1 PPR repeat 1.2E-07 21 23.80 423 450
PPR_3 Pentatricopeptide repeat domain 2.2E-05 14 25.00 424 469
PPR PPR repeat 7.1E-10 28 25.00 425 453
TPR_2 Tetratricopeptide repeat 0.06 3 22.40 434 454
PPR_long Pentacotripeptide-repeat region of PRORP 2E-05 13 27.00 443 523
PPR_3 Pentatricopeptide repeat domain 6.9E-07 19 25.00 445 506
PPR_1 PPR repeat 0.33 0 23.80 455 477
PPR PPR repeat 5.9E-05 13 25.00 460 487
PPR_2 PPR repeat family 0.0052 6 30.00 464 493
PPR_1 PPR repeat 6.6E-07 18 23.80 491 521
PPR PPR repeat 2.8E-07 20 25.00 497 522
PPR_2 PPR repeat family 0.00013 12 30.00 498 522
TPR_14 Tetratricopeptide repeat 0.32 2 23.50 500 526
TPR_8 Tetratricopeptide repeat 0.61 0 25.70 504 517
TPR_2 Tetratricopeptide repeat 0.29 1 22.40 507 518
TPR_19 Tetratricopeptide repeat 0.23 1 25.00 509 533
PPR_3 Pentatricopeptide repeat domain 0.12 2 25.00 528 548
TPR_14 Tetratricopeptide repeat 0.23 2 23.50 529 568
PPR PPR repeat 0.7 0 25.00 530 547
TPR_19 Tetratricopeptide repeat 0.02 5 25.00 546 578
TPR_2 Tetratricopeptide repeat 0.68 0 22.40 564 578
PPR PPR repeat 0.41 1 25.00 567 592

654

PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_1
PPR_3
PPR_2
PPR
TPR_14
PPR_1
PPR_3
PPR_2
PPR
PPR_1
TPR_8
PPR_2
PPR_3
PPR
PPR_2
PPR
PPR_1
PPR_3
PPR
PPR_2
PPR_long
TPR_14
TPR_2
TPR_8
TPR_19
PPR_1
PPR
TPR_19
PPR_2
PPR_3
PPR
PPR_1
PPR_2
PPR_1
PPR_3
PPR
TPR_2
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
TPR_14
TPR_8
TPR_2
TPR_19
PPR_3
TPR_14
PPR
TPR_19
TPR_2
PPR

References:

TPR_8

TPR_19

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	1.8E-09	27	30.00	16	64
PPR	PPR repeat	0.0058	7	25.00	30	48
PPR_3	Pentatricopeptide repeat domain	0.0044	7	25.00	39	62
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0082	5	27.00	39	75
PPR_1	PPR repeat	0.77	-1	23.80	47	55
PPR_2	PPR repeat family	0.0092	6	30.00	86	116
PPR	PPR repeat	0.0025	8	25.00	94	116
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0003	9	27.00	94	161
PPR_1	PPR repeat	0.016	4	23.80	99	113
PPR_1	PPR repeat	2E-12	36	23.80	116	145
PPR_3	Pentatricopeptide repeat domain	1.9E-05	14	25.00	117	155
PPR_2	PPR repeat family	4.3E-16	48	30.00	117	162
PPR	PPR repeat	2.3E-12	36	25.00	120	147
TPR_14	Tetratricopeptide repeat	0.26	2	23.50	121	144
PPR_1	PPR repeat	0.14	1	23.80	148	161
PPR_3	Pentatricopeptide repeat domain	0.24	1	25.00	181	231
PPR_2	PPR repeat family	0.037	4	30.00	188	212
PPR	PPR repeat	0.00011	12	25.00	192	212
PPR_1	PPR repeat	0.0051	6	23.80	192	212
TPR_8	Tetratricopeptide repeat	0.048	4	25.70	196	212
PPR_2	PPR repeat family	6.4E-08	22	30.00	220	260
PPR_3	Pentatricopeptide repeat domain	0.28	1	25.00	221	259
PPR	PPR repeat	2.4E-07	20	25.00	222	250
PPR_2	PPR repeat family	0.001	9	30.00	290	322
PPR	PPR repeat	0.042	4	25.00	295	320
PPR_1	PPR repeat	4.3E-08	22	23.80	321	348
PPR_3	Pentatricopeptide repeat domain	2.4E-05	14	25.00	323	369
PPR	PPR repeat	3.8E-12	35	25.00	323	352
PPR_2	PPR repeat family	1.6E-14	43	30.00	323	368
PPR_long	Pentacotripeptide-repeat region of PRORP	0.024	3	27.00	326	383
TPR_14	Tetratricopeptide repeat	0.0017	9	23.50	327	359
TPR_2	Tetratricopeptide repeat	0.043	4	22.40	332	349
TPR_8	Tetratricopeptide repeat	0.28	1	25.70	332	344
TPR_19	Tetratricopeptide repeat	0.1	3	25.00	334	349
PPR_1	PPR repeat	0.0021	7	23.80	352	374
PPR	PPR repeat	0.0059	6	25.00	358	375
TPR_19	Tetratricopeptide repeat	0.32	1	25.00	391	422
PPR_2	PPR repeat family	7E-06	16	30.00	392	417
PPR_3	Pentatricopeptide repeat domain	0.016	5	25.00	392	421
PPR	PPR repeat	2.4E-06	17	25.00	396	417
PPR_1	PPR repeat	0.00084	9	23.80	397	417
PPR_2	PPR repeat family	7.7E-13	38	30.00	422	470
PPR_1	PPR repeat	1.2E-07	21	23.80	423	450
PPR_3	Pentatricopeptide repeat domain	2.2E-05	14	25.00	424	469
PPR	PPR repeat	7.1E-10	28	25.00	425	453
TPR_2	Tetratricopeptide repeat	0.06	3	22.40	434	454
PPR_long	Pentacotripeptide-repeat region of PRORP	2E-05	13	27.00	443	523
PPR_3	Pentatricopeptide repeat domain	6.9E-07	19	25.00	445	506
PPR_1	PPR repeat	0.33	0	23.80	455	477
PPR	PPR repeat	5.9E-05	13	25.00	460	487
PPR_2	PPR repeat family	0.0052	6	30.00	464	493
PPR_1	PPR repeat	6.6E-07	18	23.80	491	521
PPR	PPR repeat	2.8E-07	20	25.00	497	522
PPR_2	PPR repeat family	0.00013	12	30.00	498	522
TPR_14	Tetratricopeptide repeat	0.32	2	23.50	500	526
TPR_8	Tetratricopeptide repeat	0.61	0	25.70	504	517
TPR_2	Tetratricopeptide repeat	0.29	1	22.40	507	518
TPR_19	Tetratricopeptide repeat	0.23	1	25.00	509	533
PPR_3	Pentatricopeptide repeat domain	0.12	2	25.00	528	548
TPR_14	Tetratricopeptide repeat	0.23	2	23.50	529	568
PPR	PPR repeat	0.7	0	25.00	530	547
TPR_19	Tetratricopeptide repeat	0.02	5	25.00	546	578
TPR_2	Tetratricopeptide repeat	0.68	0	22.40	564	578
PPR	PPR repeat	0.41	1	25.00	567	592