c2pfam

AT1G70610.1 :

Domain Description Evalue Bits GA Start End
ABC_membrane ABC transporter transmembrane region 0 139 22.00 142 406
CitMHS Citrate transporter 0.00021 11 20.10 173 345
ABC_membrane_3 ABC transporter transmembrane region 2.7E-07 21 27.00 250 362
Chordopox_A13L Chordopoxvirus A13L protein 1.4E-05 16 22.60 282 311
Ku_PK_bind Ku C terminal domain like 0.00052 11 21.30 308 362
AAA_33 AAA domain 0.43 2 27.00 325 352
ABC_ATPase Predicted ATPase of the ABC class 0.02 4 19.30 441 502
RsgA_GTPase RsgA GTPase 2E-06 19 30.00 447 505
ABC_tran ABC transporter 1.2E-38 124 23.10 474 621
AAA_23 AAA domain 0.00048 11 27.00 474 503
AAA_29 P-loop containing region of AAA domain 2.7E-06 18 27.00 476 502
DEAD DEAD/DEAH box helicase 0.00016 12 20.60 482 650
AAA_30 AAA domain 0.00032 11 27.00 482 515
AAA_25 AAA domain 0.0071 7 27.00 482 500
CPT Chloramphenicol phosphotransferase-like protein 0.00017 12 21.00 483 615
AAA_16 AAA ATPase domain 1.2E-06 20 32.60 483 620
SMC_N RecF/RecN/SMC N terminal domain 0.0051 7 40.00 484 501
AAA_14 AAA domain 0.0046 8 27.00 484 507
AAA_33 AAA domain 1.3E-05 16 27.00 485 512
AAA_22 AAA domain 6E-06 17 27.00 485 648
MMR_HSR1 GTPase of unknown function 3.6E-05 15 24.50 486 505
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0031 8 27.00 486 519
DUF87 Domain of unknown function DUF87 4.5E-05 14 20.90 486 516
AAA_18 AAA domain 0.00081 11 29.40 486 506
TniB Bacterial TniB protein 0.26 1 20.10 486 509
AAA ATPase family associated with various cellular activities (AAA) 0.025 6 20.80 487 544
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.021 5 27.00 571 625
ABC_ATPase Predicted ATPase of the ABC class 0.00044 10 19.30 573 673
SMC_N RecF/RecN/SMC N terminal domain 6.8E-08 23 40.00 588 668
AAA ATPase family associated with various cellular activities (AAA) 0.011 7 20.80 599 661
AAA_25 AAA domain 0.16 2 27.00 602 630
SbcCD_C Putative exonuclease SbcCD, C subunit 0.00093 10 27.00 609 634
TniB Bacterial TniB protein 0.0024 8 20.10 610 642
AAA_14 AAA domain 0.2 3 27.00 614 685

700

ABC_membrane
CitMHS
ABC_membrane_3
Chordopox_A13L
Ku_PK_bind
AAA_33
ABC_ATPase
RsgA_GTPase
ABC_tran
AAA_23
AAA_29
DEAD
AAA_30
AAA_25
CPT
AAA_16
SMC_N
AAA_14
AAA_33
AAA_22
MMR_HSR1
AAA_21
DUF87
AAA_18
TniB
AAA
AAA_21
ABC_ATPase
SMC_N
AAA
AAA_25
SbcCD_C
TniB
AAA_14

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

RsgA_GTPase

SbcCD_C

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

ABC_membrane_3

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

CPT
11468347 Structural basis for chloramphenicol tolerance in Streptomyces venezuelae by chloramphenicol phosphotransferase activity. Protein Sci 2001;10:1508-1513.

Chordopox_A13L
9311819 Vaccinia virus membrane proteins p8 and p16 are cotranslationally inserted into the rough endoplasmic reticulum and retained in the intermediate compartment. J Virol 1997;71:7404-7420.

AAA_33

AAA_30

AAA_29

AAA_25

AAA_23

AAA_22

AAA_21

AAA_18

Ku_PK_bind
14672664 The 3D solution structure of the C-terminal region of Ku86 (Ku86CTR). J Mol Biol. 2004;335:573-582.

AAA_16

AAA_14

CitMHS

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

ABC_membrane

ABC_ATPase

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

DUF87

Domain	Description	Evalue	Bits	GA	Start	End
ABC_membrane	ABC transporter transmembrane region	0	139	22.00	142	406
CitMHS	Citrate transporter	0.00021	11	20.10	173	345
ABC_membrane_3	ABC transporter transmembrane region	2.7E-07	21	27.00	250	362
Chordopox_A13L	Chordopoxvirus A13L protein	1.4E-05	16	22.60	282	311
Ku_PK_bind	Ku C terminal domain like	0.00052	11	21.30	308	362
AAA_33	AAA domain	0.43	2	27.00	325	352
ABC_ATPase	Predicted ATPase of the ABC class	0.02	4	19.30	441	502
RsgA_GTPase	RsgA GTPase	2E-06	19	30.00	447	505
ABC_tran	ABC transporter	1.2E-38	124	23.10	474	621
AAA_23	AAA domain	0.00048	11	27.00	474	503
AAA_29	P-loop containing region of AAA domain	2.7E-06	18	27.00	476	502
DEAD	DEAD/DEAH box helicase	0.00016	12	20.60	482	650
AAA_30	AAA domain	0.00032	11	27.00	482	515
AAA_25	AAA domain	0.0071	7	27.00	482	500
CPT	Chloramphenicol phosphotransferase-like protein	0.00017	12	21.00	483	615
AAA_16	AAA ATPase domain	1.2E-06	20	32.60	483	620
SMC_N	RecF/RecN/SMC N terminal domain	0.0051	7	40.00	484	501
AAA_14	AAA domain	0.0046	8	27.00	484	507
AAA_33	AAA domain	1.3E-05	16	27.00	485	512
AAA_22	AAA domain	6E-06	17	27.00	485	648
MMR_HSR1	GTPase of unknown function	3.6E-05	15	24.50	486	505
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0031	8	27.00	486	519
DUF87	Domain of unknown function DUF87	4.5E-05	14	20.90	486	516
AAA_18	AAA domain	0.00081	11	29.40	486	506
TniB	Bacterial TniB protein	0.26	1	20.10	486	509
AAA	ATPase family associated with various cellular activities (AAA)	0.025	6	20.80	487	544
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.021	5	27.00	571	625
ABC_ATPase	Predicted ATPase of the ABC class	0.00044	10	19.30	573	673
SMC_N	RecF/RecN/SMC N terminal domain	6.8E-08	23	40.00	588	668
AAA	ATPase family associated with various cellular activities (AAA)	0.011	7	20.80	599	661
AAA_25	AAA domain	0.16	2	27.00	602	630
SbcCD_C	Putative exonuclease SbcCD, C subunit	0.00093	10	27.00	609	634
TniB	Bacterial TniB protein	0.0024	8	20.10	610	642
AAA_14	AAA domain	0.2	3	27.00	614	685