c2pfam

AT1G71820.1 :

Domain Description Evalue Bits GA Start End
Vps53_N Vps53-like, N-terminal 1.2E-06 17 24.00 13 152
RGS Regulator of G protein signaling domain 0.13 3 21.00 26 60
Gp-FAR-1 Nematode fatty acid retinoid binding protein (Gp-FAR-1) 0.0028 8 25.30 26 90
FlgN FlgN protein 0.0011 9 21.80 27 100
Com_YlbF Control of competence regulator ComK, YlbF/YmcA 0.0004 11 23.90 34 124
Sec6 Exocyst complex component Sec6 0.56 -2 30.10 47 82
DUF2757 Protein of unknown function (DUF2757) 0.00015 12 21.50 48 100
Sec20 Sec20 8.2E-06 16 27.00 50 97
DUF4200 Domain of unknown function (DUF4200) 0.22 2 29.70 56 93
Sec20 Sec20 0.61 0 27.00 116 151
FlgN FlgN protein 0.56 1 21.80 143 177
DUF4200 Domain of unknown function (DUF4200) 0.0003 11 29.70 158 232
Sec6 Exocyst complex component Sec6 0 467 30.10 173 732
Tex_N Tex-like protein N-terminal domain 0.00027 11 20.20 208 307
TipAS TipAS antibiotic-recognition domain 0.00053 10 29.90 260 342
rve_3 Integrase core domain 0.00081 9 26.50 393 413
Tex_N Tex-like protein N-terminal domain 0.53 0 20.20 483 522
RGS Regulator of G protein signaling domain 0.065 3 21.00 524 602
Vps53_N Vps53-like, N-terminal 0.77 -2 24.00 535 615
Gp-FAR-1 Nematode fatty acid retinoid binding protein (Gp-FAR-1) 0.91 0 25.30 606 649
Vps53_N Vps53-like, N-terminal 0.34 -1 24.00 614 696
HemN_C HemN C-terminal region 0.0002 11 21.10 617 664
RGS Regulator of G protein signaling domain 0.0065 7 21.00 633 726

752

Vps53_N
RGS
Gp-FAR-1
FlgN
Com_YlbF
Sec6
DUF2757
Sec20
DUF4200
Sec20
FlgN
DUF4200
Sec6
Tex_N
TipAS
rve_3
Tex_N
RGS
Vps53_N
Gp-FAR-1
Vps53_N
HemN_C
RGS

References:

FlgN
11169117 Substrate complexes and domain organization of the Salmonella flagellar export chaperones FlgN and FliT. Mol Microbiol 2001;39:781-791.

HemN_C
12196143 Terminal steps of haem biosynthesis. Biochem Soc Trans 2002;30:590-595.

DUF2757

Com_YlbF

DUF4200

Sec6
11854409 The multiprotein exocyst complex is essential for cell separation in Schizosaccharomyces pombe. Mol Biol Cell 2002;13:515-529.

Tex_N
8755871 A new gene locus of Bordetella pertussis defines a novel family of prokaryotic transcriptional accessory proteins. J Bacteriol. 1996;178:4445-4452.

Gp-FAR-1
11368765 A surface-associated retinol- and fatty acid-binding protein (Gp-FAR-1) from the potato cyst nematode Globodera pallida: lipid binding activities, structural analysis and expression pattern. Biochem J 2001;356:387-394.

rve_3

RGS
9108480 Structure of RGS4 bound to AlF4--activated G(i alpha1): stabilization of the transition state for GTP hydrolysis. Cell 1997;89:251-261.
7791771 Inhibition of G-protein signaling by dominant gain-of-function mutations in Sst2p, a pheromone desensitization factor in Saccharomyces cerevisiae. Mol Cell Biol 1995;15:3635-3643.
8774882 RGS family members: GTPase-activating proteins for heterotrimeric G-protein alpha-subunits. Nature 1996;383:172-175.
8756726 GAIP and RGS4 are GTPase-activating proteins for the Gi subfamily of G protein alpha subunits. Cell 1996;86:445-452.
8524874 GAIP, a protein that specifically interacts with the trimeric G protein G alpha i3, is a member of a protein family with a highly conserved core domain. Proc Natl Acad Sci U S A 1995;92:11916-11920.

Sec20
8334998 The TIP1 gene of Saccharomyces cerevisiae encodes an 80 kDa cytoplasmic protein that interacts with the cytoplasmic domain of Sec20p. EMBO J 1993;12:2831-2840.

TipAS
12682015 Structural basis for antibiotic recognition by the TipA class of multidrug-resistance transcriptional regulators. EMBO J 2003;22:1824-1834.

Vps53_N
1063730 A new translocation in chronic myelogenous leukemia. Hum Genet 1976;32:229-232.

Domain	Description	Evalue	Bits	GA	Start	End
Vps53_N	Vps53-like, N-terminal	1.2E-06	17	24.00	13	152
RGS	Regulator of G protein signaling domain	0.13	3	21.00	26	60
Gp-FAR-1	Nematode fatty acid retinoid binding protein (Gp-FAR-1)	0.0028	8	25.30	26	90
FlgN	FlgN protein	0.0011	9	21.80	27	100
Com_YlbF	Control of competence regulator ComK, YlbF/YmcA	0.0004	11	23.90	34	124
Sec6	Exocyst complex component Sec6	0.56	-2	30.10	47	82
DUF2757	Protein of unknown function (DUF2757)	0.00015	12	21.50	48	100
Sec20	Sec20	8.2E-06	16	27.00	50	97
DUF4200	Domain of unknown function (DUF4200)	0.22	2	29.70	56	93
Sec20	Sec20	0.61	0	27.00	116	151
FlgN	FlgN protein	0.56	1	21.80	143	177
DUF4200	Domain of unknown function (DUF4200)	0.0003	11	29.70	158	232
Sec6	Exocyst complex component Sec6	0	467	30.10	173	732
Tex_N	Tex-like protein N-terminal domain	0.00027	11	20.20	208	307
TipAS	TipAS antibiotic-recognition domain	0.00053	10	29.90	260	342
rve_3	Integrase core domain	0.00081	9	26.50	393	413
Tex_N	Tex-like protein N-terminal domain	0.53	0	20.20	483	522
RGS	Regulator of G protein signaling domain	0.065	3	21.00	524	602
Vps53_N	Vps53-like, N-terminal	0.77	-2	24.00	535	615
Gp-FAR-1	Nematode fatty acid retinoid binding protein (Gp-FAR-1)	0.91	0	25.30	606	649
Vps53_N	Vps53-like, N-terminal	0.34	-1	24.00	614	696
HemN_C	HemN C-terminal region	0.0002	11	21.10	617	664
RGS	Regulator of G protein signaling domain	0.0065	7	21.00	633	726