c2pfam

AT1G72860.1 :

Domain Description Evalue Bits GA Start End
TIR TIR domain 0 157 21.20 11 178
DUF1863 MTH538 TIR-like domain (DUF1863) 4.2E-05 14 21.20 12 88
TIR_2 TIR domain 2.1E-20 63 28.00 14 111
NB-ARC NB-ARC domain 1.1E-24 77 23.50 189 427
AAA_16 AAA ATPase domain 9.4E-07 19 32.60 189 241
AAA_22 AAA domain 4.3E-05 14 27.00 208 308
NACHT NACHT domain 0.00022 11 20.40 209 356
LRR_3 Leucine Rich Repeat 1.3E-05 15 20.20 608 626
LRR_8 Leucine rich repeat 0.0021 8 27.00 657 679
LRR_4 Leucine Rich repeats (2 copies) 0.0003 11 27.00 658 680
LRR_6 Leucine Rich repeat 0.26 2 23.40 661 670
LRR_1 Leucine Rich Repeat 0.051 5 20.60 662 679
LRR_4 Leucine Rich repeats (2 copies) 0.0027 8 27.00 685 718
LRR_6 Leucine Rich repeat 0.019 5 23.40 708 719
LRR_1 Leucine Rich Repeat 0.46 2 20.60 709 719
LRR_4 Leucine Rich repeats (2 copies) 0.024 5 27.00 918 955
LRR_8 Leucine rich repeat 0.00056 9 27.00 918 966
LRR_1 Leucine Rich Repeat 0.86 1 20.60 941 955
LRR_4 Leucine Rich repeats (2 copies) 0.0011 9 27.00 962 1001
LRR_1 Leucine Rich Repeat 0.36 2 20.60 983 997
LRR_4 Leucine Rich repeats (2 copies) 0.091 3 27.00 1028 1050
LRR_8 Leucine rich repeat 0.0038 7 27.00 1033 1068
LRR_4 Leucine Rich repeats (2 copies) 0.00029 11 27.00 1036 1078
LRR_1 Leucine Rich Repeat 0.32 2 20.60 1036 1056
LRR_1 Leucine Rich Repeat 0.6 1 20.60 1059 1083
LRR_4 Leucine Rich repeats (2 copies) 0.052 4 27.00 1081 1113
LRR_6 Leucine Rich repeat 0.02 5 23.40 1100 1111
LRR_8 Leucine rich repeat 0.99 -1 27.00 1101 1110
LRR_1 Leucine Rich Repeat 0.0082 7 20.60 1104 1118

1163

TIR
DUF1863
TIR_2
NB-ARC
AAA_16
AAA_22
NACHT
LRR_3
LRR_8
LRR_4
LRR_6
LRR_1
LRR_4
LRR_6
LRR_1
LRR_4
LRR_8
LRR_1
LRR_4
LRR_1
LRR_4
LRR_8
LRR_4
LRR_1
LRR_1
LRR_4
LRR_6
LRR_8
LRR_1

References:

AAA_16

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

DUF1863
10964569 Structure-based functional classification of hypothetical protein MTH538 from Methanobacterium thermoautotrophicum. J Mol Biol. 2000;302:189-203.

LRR_3
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRR_8

LRR_6

LRR_4

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

TIR_2

TIR
9013863 The cloning and characterization of human MyD88: a member of an IL-1 receptor related family. FEBS Lett 1997;402:81-84.
9237759 A human homologue of the Drosophila Toll protein signals activation of adaptive immunity [see comments] Nature 1997;388:394-397.
12186654 Toll-like receptors: a family of pattern-recognition receptors in mammals. Genome Biol 2002;3:REVIEWS3011.

AAA_22

Domain	Description	Evalue	Bits	GA	Start	End
TIR	TIR domain	0	157	21.20	11	178
DUF1863	MTH538 TIR-like domain (DUF1863)	4.2E-05	14	21.20	12	88
TIR_2	TIR domain	2.1E-20	63	28.00	14	111
NB-ARC	NB-ARC domain	1.1E-24	77	23.50	189	427
AAA_16	AAA ATPase domain	9.4E-07	19	32.60	189	241
AAA_22	AAA domain	4.3E-05	14	27.00	208	308
NACHT	NACHT domain	0.00022	11	20.40	209	356
LRR_3	Leucine Rich Repeat	1.3E-05	15	20.20	608	626
LRR_8	Leucine rich repeat	0.0021	8	27.00	657	679
LRR_4	Leucine Rich repeats (2 copies)	0.0003	11	27.00	658	680
LRR_6	Leucine Rich repeat	0.26	2	23.40	661	670
LRR_1	Leucine Rich Repeat	0.051	5	20.60	662	679
LRR_4	Leucine Rich repeats (2 copies)	0.0027	8	27.00	685	718
LRR_6	Leucine Rich repeat	0.019	5	23.40	708	719
LRR_1	Leucine Rich Repeat	0.46	2	20.60	709	719
LRR_4	Leucine Rich repeats (2 copies)	0.024	5	27.00	918	955
LRR_8	Leucine rich repeat	0.00056	9	27.00	918	966
LRR_1	Leucine Rich Repeat	0.86	1	20.60	941	955
LRR_4	Leucine Rich repeats (2 copies)	0.0011	9	27.00	962	1001
LRR_1	Leucine Rich Repeat	0.36	2	20.60	983	997
LRR_4	Leucine Rich repeats (2 copies)	0.091	3	27.00	1028	1050
LRR_8	Leucine rich repeat	0.0038	7	27.00	1033	1068
LRR_4	Leucine Rich repeats (2 copies)	0.00029	11	27.00	1036	1078
LRR_1	Leucine Rich Repeat	0.32	2	20.60	1036	1056
LRR_1	Leucine Rich Repeat	0.6	1	20.60	1059	1083
LRR_4	Leucine Rich repeats (2 copies)	0.052	4	27.00	1081	1113
LRR_6	Leucine Rich repeat	0.02	5	23.40	1100	1111
LRR_8	Leucine rich repeat	0.99	-1	27.00	1101	1110
LRR_1	Leucine Rich Repeat	0.0082	7	20.60	1104	1118