c2pfam

AT1G72960.1 :

Domain Description Evalue Bits GA Start End
GBP Guanylate-binding protein, N-terminal domain 3.1E-06 16 20.10 42 126
AAA_14 AAA domain 0.00011 12 27.00 43 67
AAA_16 AAA ATPase domain 0.00046 10 32.60 43 63
AAA_29 P-loop containing region of AAA domain 0.00021 10 27.00 44 59
ABC_tran ABC transporter 9.4E-05 12 23.10 44 66
Dynamin_N Dynamin family 3.7E-07 20 21.00 45 69
MMR_HSR1 GTPase of unknown function 5.9E-07 19 24.50 45 117
AAA_28 AAA domain 0.00012 12 27.00 45 64
RHD3 Root hair defective 3 GTP-binding protein (RHD3) 0 1069 19.10 48 789

795

GBP
AAA_14
AAA_16
AAA_29
ABC_tran
Dynamin_N
MMR_HSR1
AAA_28
RHD3

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

AAA_16

AAA_14

RHD3
9087433 The ROOT HAIR DEFECTIVE3 gene encodes an evolutionarily conserved protein with GTP-binding motifs and is required for regulated cell enlargement in Arabidopsis. Genes Dev 1997;11:799-811.
12427979 Function of a plant stress-induced gene, HVA22. Synthetic enhancement screen with its yeast homolog reveals its role in vesicular traffic. Plant Physiol 2002;130:1121-1131.

AAA_29

AAA_28

GBP
10676968 Structure of human guanylate-binding protein 1 representing a unique class of GTP-binding proteins. Nature 2000;403:567-571.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

Domain	Description	Evalue	Bits	GA	Start	End
GBP	Guanylate-binding protein, N-terminal domain	3.1E-06	16	20.10	42	126
AAA_14	AAA domain	0.00011	12	27.00	43	67
AAA_16	AAA ATPase domain	0.00046	10	32.60	43	63
AAA_29	P-loop containing region of AAA domain	0.00021	10	27.00	44	59
ABC_tran	ABC transporter	9.4E-05	12	23.10	44	66
Dynamin_N	Dynamin family	3.7E-07	20	21.00	45	69
MMR_HSR1	GTPase of unknown function	5.9E-07	19	24.50	45	117
AAA_28	AAA domain	0.00012	12	27.00	45	64
RHD3	Root hair defective 3 GTP-binding protein (RHD3)	0	1069	19.10	48	789