c2pfam

AT1G74310.1 :

Domain Description Evalue Bits GA Start End
Clp_N Clp amino terminal domain 2.6E-10 32 20.70 17 57
Clp_N Clp amino terminal domain 2.4E-10 32 20.70 96 146
DUF1690 Protein of Unknown function (DUF1690) 0.35 3 28.00 134 167
AAA_16 AAA ATPase domain 3.6E-09 29 32.60 181 227
Sigma54_activat Sigma-54 interaction domain 0.0045 8 20.20 182 282
ATPase_2 ATPase domain predominantly from Archaea 0.00029 13 33.20 184 223
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.0066 8 26.60 187 225
Mg_chelatase Magnesium chelatase, subunit ChlI 0.042 5 20.30 187 222
AAA_8 P-loop containing dynein motor region D4 0.022 6 25.60 187 282
ResIII Type III restriction enzyme, res subunit 0.82 1 20.90 188 226
DUF815 Protein of unknown function (DUF815) 0.00066 11 20.10 191 281
RsgA_GTPase RsgA GTPase 0.017 7 30.00 192 223
Zeta_toxin Zeta toxin 0.1 4 20.10 198 224
IstB_IS21 IstB-like ATP binding protein 0.0012 10 24.10 198 264
VirE Virulence-associated protein E 0.032 5 21.50 198 225
AAA_7 P-loop containing dynein motor region 0.006 8 25.80 199 225
AAA_22 AAA domain 4.4E-05 16 27.00 199 285
AAA_19 AAA domain 0.0035 9 25.10 199 227
AAA_29 P-loop containing region of AAA domain 0.083 5 27.00 200 220
AAA_30 AAA domain 0.015 7 27.00 200 226
TniB Bacterial TniB protein 2.2E-05 16 20.10 201 339
AAA_24 AAA domain 0.011 7 27.00 202 233
AAA_2 AAA domain (Cdc48 subfamily) 0.007 8 20.60 203 282
AAA ATPase family associated with various cellular activities (AAA) 4E-16 51 20.80 204 317
AAA_5 AAA domain (dynein-related subfamily) 2.1E-05 16 20.80 204 282
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.067 5 20.00 204 224
NACHT NACHT domain 0.00028 13 20.40 204 232
AAA_33 AAA domain 0.024 7 27.00 204 223
AAA_14 AAA domain 0.00016 13 27.00 204 286
ABC_tran ABC transporter 0.39 3 23.10 204 223
AAA_25 AAA domain 0.0011 10 27.00 204 284
AAA_28 AAA domain 0.012 8 27.00 204 223
Roc Ras of Complex, Roc, domain of DAPkinase 0.015 7 27.00 204 225
SRP54 SRP54-type protein, GTPase domain 0.16 3 20.50 204 227
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.87 1 20.50 204 223
NTPase_1 NTPase 0.016 7 23.90 205 227
RNA_helicase RNA helicase 0.011 8 21.50 205 226
AAA_3 ATPase family associated with various cellular activities (AAA) 0.074 5 21.10 205 224
AAA_18 AAA domain 0.0027 10 29.40 205 275
ATPase_2 ATPase domain predominantly from Archaea 0.056 5 33.20 256 285
AAA_lid_9 AAA lid domain 2.1E-37 119 22.80 344 442
DASH_Spc19 Spc19 0.00073 11 25.00 394 488
BBS2_C Ciliary BBSome complex subunit 2, C-terminal 0.15 2 25.00 407 441
DUF2987 Protein of unknown function (DUF2987) 0.00055 12 25.00 417 464
DUF1690 Protein of Unknown function (DUF1690) 0.11 5 28.00 417 492
Exonuc_VII_L Exonuclease VII, large subunit 0.0025 9 21.70 418 503
DUF87 Domain of unknown function DUF87 0.28 3 20.90 425 491
BBS2_C Ciliary BBSome complex subunit 2, C-terminal 0.0019 9 25.00 464 534
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.062 5 20.00 469 489
Torsin Torsin 0.0025 10 20.90 559 626
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.0013 10 20.00 572 623
AAA_16 AAA ATPase domain 1.3E-06 21 32.60 572 683
ResIII Type III restriction enzyme, res subunit 0.00022 13 20.90 573 630
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.0023 10 26.60 596 623
T2SSE Type II/IV secretion system protein 2.1E-05 15 24.90 596 675
TniB Bacterial TniB protein 0.32 2 20.10 596 621
AAA_8 P-loop containing dynein motor region D4 0.15 3 25.60 596 623
AAA_29 P-loop containing region of AAA domain 0.015 7 27.00 597 619
DUF815 Protein of unknown function (DUF815) 0.017 6 20.10 597 642
AAA_2 AAA domain (Cdc48 subfamily) 0 178 20.60 598 762
AAA_22 AAA domain 5.2E-07 22 27.00 600 697
Sigma54_activat Sigma-54 interaction domain 2.4E-09 29 20.20 600 718
AAA_19 AAA domain 0.9 2 25.10 600 625
DNA_pol3_delta2 DNA polymerase III, delta subunit 0.00066 11 27.00 600 628
AAA_23 AAA domain 0.0074 9 27.00 600 634
VirE Virulence-associated protein E 0.013 7 21.50 601 628
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0013 10 20.30 601 625
AAA_7 P-loop containing dynein motor region 4.9E-06 18 25.80 601 648
IstB_IS21 IstB-like ATP binding protein 8.5E-05 14 24.10 602 628
AAA_5 AAA domain (dynein-related subfamily) 3.5E-14 45 20.80 602 720
RsgA_GTPase RsgA GTPase 0.007 8 30.00 602 622
AAA_25 AAA domain 0.2 3 27.00 602 620
DUF87 Domain of unknown function DUF87 0.0043 9 20.90 602 628
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.0064 8 20.50 602 622
SRP54 SRP54-type protein, GTPase domain 0.022 6 20.50 602 625
AAA_30 AAA domain 0.12 4 27.00 603 626
Zeta_toxin Zeta toxin 0.0021 9 20.10 603 642
ABC_tran ABC transporter 0.0026 10 23.10 603 628
AAA_24 AAA domain 0.036 5 27.00 603 623
RNA_helicase RNA helicase 0.00094 11 21.50 603 626
Roc Ras of Complex, Roc, domain of DAPkinase 0.0012 11 27.00 603 634
AAA_28 AAA domain 0.0039 9 27.00 603 622
AAA ATPase family associated with various cellular activities (AAA) 8.7E-13 41 20.80 603 729
AAA_33 AAA domain 0.00077 11 27.00 603 641
NACHT NACHT domain 0.012 7 20.40 604 627
AAA_14 AAA domain 0.0011 11 27.00 604 697
AAA_18 AAA domain 0.00013 14 29.40 604 624
ATPase_2 ATPase domain predominantly from Archaea 0.01 7 33.20 605 631
NTPase_1 NTPase 0.042 5 23.90 606 624
AAA_3 ATPase family associated with various cellular activities (AAA) 0.014 7 21.10 607 717
DNA_pol3_delta2 DNA polymerase III, delta subunit 0.7 2 27.00 671 696
Clp_N Clp amino terminal domain 0.72 2 20.70 719 730
Tox-ODYAM1 Toxin in Odyssella and Amoebophilus 0.0012 10 25.00 745 798
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 4.7E-24 76 21.40 768 847

911

Clp_N
Clp_N
DUF1690
AAA_16
Sigma54_activat
ATPase_2
TsaE
Mg_chelatase
AAA_8
ResIII
DUF815
RsgA_GTPase
Zeta_toxin
IstB_IS21
VirE
AAA_7
AAA_22
AAA_19
AAA_29
AAA_30
TniB
AAA_24
AAA_2
AAA
AAA_5
RuvB_N
NACHT
AAA_33
AAA_14
ABC_tran
AAA_25
AAA_28
Roc
SRP54
PduV-EutP
NTPase_1
RNA_helicase
AAA_3
AAA_18
ATPase_2
AAA_lid_9
DASH_Spc19
BBS2_C
DUF2987
DUF1690
Exonuc_VII_L
DUF87
BBS2_C
RuvB_N
Torsin
RuvB_N
AAA_16
ResIII
TsaE
T2SSE
TniB
AAA_8
AAA_29
DUF815
AAA_2
AAA_22
Sigma54_activat
AAA_19
DNA_pol3_delta2
AAA_23
VirE
Mg_chelatase
AAA_7
IstB_IS21
AAA_5
RsgA_GTPase
AAA_25
DUF87
PduV-EutP
SRP54
AAA_30
Zeta_toxin
ABC_tran
AAA_24
RNA_helicase
Roc
AAA_28
AAA
AAA_33
NACHT
AAA_14
AAA_18
ATPase_2
NTPase_1
AAA_3
DNA_pol3_delta2
Clp_N
Tox-ODYAM1
ClpB_D2-small

References:

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_3
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

DNA_pol3_delta2

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

TsaE

DUF2987

ClpB_D2-small
14567920 The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state. Cell. 2003;115:229-240.

ResIII

IstB_IS21

VirE

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

DUF1690

ATPase_2

Clp_N
10982797 Structure and activity of ClpB from Escherichia coli. Role of the amino-and -carboxyl-terminal domains. J Biol Chem 2000;275:37565-37571.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

DUF815

T2SSE

AAA_23

AAA_8

AAA_7

Roc

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

BBS2_C

AAA_30

AAA_29

AAA_28

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_25

AAA_24

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

AAA_22

AAA_19

AAA_18

AAA_16

Tox-ODYAM1

AAA_14

DASH_Spc19
11799062 The mitotic spindle is required for loading of the DASH complex onto the kinetochore. Genes Dev 2002;16:183-197.
11782438 Four new subunits of the Dam1-Duo1 complex reveal novel functions in sister kinetochore biorientation. EMBO J 2002;21:181-193.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_lid_9

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

Torsin
12554684 Suppression of polyglutamine-induced protein aggregation in Caenorhabditis elegans by torsin proteins. Hum Mol Genet 2003;12:307-319.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

NTPase_1

RsgA_GTPase

DUF87

Domain	Description	Evalue	Bits	GA	Start	End
Clp_N	Clp amino terminal domain	2.6E-10	32	20.70	17	57
Clp_N	Clp amino terminal domain	2.4E-10	32	20.70	96	146
DUF1690	Protein of Unknown function (DUF1690)	0.35	3	28.00	134	167
AAA_16	AAA ATPase domain	3.6E-09	29	32.60	181	227
Sigma54_activat	Sigma-54 interaction domain	0.0045	8	20.20	182	282
ATPase_2	ATPase domain predominantly from Archaea	0.00029	13	33.20	184	223
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.0066	8	26.60	187	225
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.042	5	20.30	187	222
AAA_8	P-loop containing dynein motor region D4	0.022	6	25.60	187	282
ResIII	Type III restriction enzyme, res subunit	0.82	1	20.90	188	226
DUF815	Protein of unknown function (DUF815)	0.00066	11	20.10	191	281
RsgA_GTPase	RsgA GTPase	0.017	7	30.00	192	223
Zeta_toxin	Zeta toxin	0.1	4	20.10	198	224
IstB_IS21	IstB-like ATP binding protein	0.0012	10	24.10	198	264
VirE	Virulence-associated protein E	0.032	5	21.50	198	225
AAA_7	P-loop containing dynein motor region	0.006	8	25.80	199	225
AAA_22	AAA domain	4.4E-05	16	27.00	199	285
AAA_19	AAA domain	0.0035	9	25.10	199	227
AAA_29	P-loop containing region of AAA domain	0.083	5	27.00	200	220
AAA_30	AAA domain	0.015	7	27.00	200	226
TniB	Bacterial TniB protein	2.2E-05	16	20.10	201	339
AAA_24	AAA domain	0.011	7	27.00	202	233
AAA_2	AAA domain (Cdc48 subfamily)	0.007	8	20.60	203	282
AAA	ATPase family associated with various cellular activities (AAA)	4E-16	51	20.80	204	317
AAA_5	AAA domain (dynein-related subfamily)	2.1E-05	16	20.80	204	282
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.067	5	20.00	204	224
NACHT	NACHT domain	0.00028	13	20.40	204	232
AAA_33	AAA domain	0.024	7	27.00	204	223
AAA_14	AAA domain	0.00016	13	27.00	204	286
ABC_tran	ABC transporter	0.39	3	23.10	204	223
AAA_25	AAA domain	0.0011	10	27.00	204	284
AAA_28	AAA domain	0.012	8	27.00	204	223
Roc	Ras of Complex, Roc, domain of DAPkinase	0.015	7	27.00	204	225
SRP54	SRP54-type protein, GTPase domain	0.16	3	20.50	204	227
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.87	1	20.50	204	223
NTPase_1	NTPase	0.016	7	23.90	205	227
RNA_helicase	RNA helicase	0.011	8	21.50	205	226
AAA_3	ATPase family associated with various cellular activities (AAA)	0.074	5	21.10	205	224
AAA_18	AAA domain	0.0027	10	29.40	205	275
ATPase_2	ATPase domain predominantly from Archaea	0.056	5	33.20	256	285
AAA_lid_9	AAA lid domain	2.1E-37	119	22.80	344	442
DASH_Spc19	Spc19	0.00073	11	25.00	394	488
BBS2_C	Ciliary BBSome complex subunit 2, C-terminal	0.15	2	25.00	407	441
DUF2987	Protein of unknown function (DUF2987)	0.00055	12	25.00	417	464
DUF1690	Protein of Unknown function (DUF1690)	0.11	5	28.00	417	492
Exonuc_VII_L	Exonuclease VII, large subunit	0.0025	9	21.70	418	503
DUF87	Domain of unknown function DUF87	0.28	3	20.90	425	491
BBS2_C	Ciliary BBSome complex subunit 2, C-terminal	0.0019	9	25.00	464	534
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.062	5	20.00	469	489
Torsin	Torsin	0.0025	10	20.90	559	626
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.0013	10	20.00	572	623
AAA_16	AAA ATPase domain	1.3E-06	21	32.60	572	683
ResIII	Type III restriction enzyme, res subunit	0.00022	13	20.90	573	630
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.0023	10	26.60	596	623
T2SSE	Type II/IV secretion system protein	2.1E-05	15	24.90	596	675
TniB	Bacterial TniB protein	0.32	2	20.10	596	621
AAA_8	P-loop containing dynein motor region D4	0.15	3	25.60	596	623
AAA_29	P-loop containing region of AAA domain	0.015	7	27.00	597	619
DUF815	Protein of unknown function (DUF815)	0.017	6	20.10	597	642
AAA_2	AAA domain (Cdc48 subfamily)	0	178	20.60	598	762
AAA_22	AAA domain	5.2E-07	22	27.00	600	697
Sigma54_activat	Sigma-54 interaction domain	2.4E-09	29	20.20	600	718
AAA_19	AAA domain	0.9	2	25.10	600	625
DNA_pol3_delta2	DNA polymerase III, delta subunit	0.00066	11	27.00	600	628
AAA_23	AAA domain	0.0074	9	27.00	600	634
VirE	Virulence-associated protein E	0.013	7	21.50	601	628
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0013	10	20.30	601	625
AAA_7	P-loop containing dynein motor region	4.9E-06	18	25.80	601	648
IstB_IS21	IstB-like ATP binding protein	8.5E-05	14	24.10	602	628
AAA_5	AAA domain (dynein-related subfamily)	3.5E-14	45	20.80	602	720
RsgA_GTPase	RsgA GTPase	0.007	8	30.00	602	622
AAA_25	AAA domain	0.2	3	27.00	602	620
DUF87	Domain of unknown function DUF87	0.0043	9	20.90	602	628
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.0064	8	20.50	602	622
SRP54	SRP54-type protein, GTPase domain	0.022	6	20.50	602	625
AAA_30	AAA domain	0.12	4	27.00	603	626
Zeta_toxin	Zeta toxin	0.0021	9	20.10	603	642
ABC_tran	ABC transporter	0.0026	10	23.10	603	628
AAA_24	AAA domain	0.036	5	27.00	603	623
RNA_helicase	RNA helicase	0.00094	11	21.50	603	626
Roc	Ras of Complex, Roc, domain of DAPkinase	0.0012	11	27.00	603	634
AAA_28	AAA domain	0.0039	9	27.00	603	622
AAA	ATPase family associated with various cellular activities (AAA)	8.7E-13	41	20.80	603	729
AAA_33	AAA domain	0.00077	11	27.00	603	641
NACHT	NACHT domain	0.012	7	20.40	604	627
AAA_14	AAA domain	0.0011	11	27.00	604	697
AAA_18	AAA domain	0.00013	14	29.40	604	624
ATPase_2	ATPase domain predominantly from Archaea	0.01	7	33.20	605	631
NTPase_1	NTPase	0.042	5	23.90	606	624
AAA_3	ATPase family associated with various cellular activities (AAA)	0.014	7	21.10	607	717
DNA_pol3_delta2	DNA polymerase III, delta subunit	0.7	2	27.00	671	696
Clp_N	Clp amino terminal domain	0.72	2	20.70	719	730
Tox-ODYAM1	Toxin in Odyssella and Amoebophilus	0.0012	10	25.00	745	798
ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	4.7E-24	76	21.40	768	847