c2pfam

AT1G74400.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 2.8E-05 13 27.00 65 183
PPR_3 Pentatricopeptide repeat domain 0.22 2 25.00 103 127
PPR PPR repeat 0.006 7 25.00 104 125
PPR_1 PPR repeat 0.038 4 23.80 113 125
RNPP_C RNPP family C-terminal domain 0.071 2 26.50 125 153
PPR_3 Pentatricopeptide repeat domain 1.2E-05 15 25.00 130 164
PPR_1 PPR repeat 0.00011 12 23.80 131 159
PPR_2 PPR repeat family 1.8E-09 28 30.00 131 178
PPR PPR repeat 2.5E-09 27 25.00 133 161
TPR_14 Tetratricopeptide repeat 0.025 6 23.50 134 159
TPR_7 Tetratricopeptide repeat 0.21 2 27.90 140 157
TPR_2 Tetratricopeptide repeat 0.77 0 22.40 141 157
TPR_19 Tetratricopeptide repeat 0.85 0 25.00 144 158
PPR PPR repeat 0.36 1 25.00 170 194
TPR_12 Tetratricopeptide repeat 0.00073 10 30.10 177 232
Phage_rep_org_N N-terminal phage replisome organiser (Phage_rep_org_N) 4.3E-05 13 22.00 195 273
PPR_long Pentacotripeptide-repeat region of PRORP 2.6E-05 13 27.00 198 338
RNPP_C RNPP family C-terminal domain 0.0022 7 26.50 199 233
PPR_3 Pentatricopeptide repeat domain 0.051 4 25.00 203 233
TPR_19 Tetratricopeptide repeat 0.0027 8 25.00 204 234
PPR PPR repeat 2.2E-07 21 25.00 208 234
PPR_2 PPR repeat family 2E-05 15 30.00 208 229
PPR_1 PPR repeat 0.00074 9 23.80 208 229
TPR_14 Tetratricopeptide repeat 0.054 4 23.50 210 232
TPR_7 Tetratricopeptide repeat 0.003 8 27.90 212 235
TPR_2 Tetratricopeptide repeat 0.0048 7 22.40 213 233
PPR_3 Pentatricopeptide repeat domain 3.3E-06 17 25.00 230 283
PPR_2 PPR repeat family 1.4E-07 22 30.00 233 285
PPR_1 PPR repeat 5.8E-08 22 23.80 234 262
PPR PPR repeat 5.3E-10 29 25.00 237 263
RNPP_C RNPP family C-terminal domain 0.03 3 26.50 239 267
TPR_12 Tetratricopeptide repeat 0.18 2 30.10 240 260
TPR_2 Tetratricopeptide repeat 0.3 1 22.40 245 260
PPR_2 PPR repeat family 0.079 3 30.00 274 303
PPR PPR repeat 0.00037 11 25.00 277 303
PPR_1 PPR repeat 9.3E-08 22 23.80 308 338
PPR PPR repeat 1.9E-05 15 25.00 315 338
PPR_2 PPR repeat family 4.9E-05 13 30.00 316 353
TPR_19 Tetratricopeptide repeat 0.79 0 25.00 318 339
PPR_3 Pentatricopeptide repeat domain 0.0029 8 25.00 339 370
PPR_1 PPR repeat 0.04 4 23.80 340 361
PPR_2 PPR repeat family 0.1 3 30.00 342 361
PPR PPR repeat 0.0039 7 25.00 345 366
PPR PPR repeat 0.22 2 25.00 381 396
TPR_2 Tetratricopeptide repeat 0.81 0 22.40 381 396
TPR_7 Tetratricopeptide repeat 0.43 1 27.90 381 396

462

PPR_long
PPR_3
PPR
PPR_1
RNPP_C
PPR_3
PPR_1
PPR_2
PPR
TPR_14
TPR_7
TPR_2
TPR_19
PPR
TPR_12
Phage_rep_org_N
PPR_long
RNPP_C
PPR_3
TPR_19
PPR
PPR_2
PPR_1
TPR_14
TPR_7
TPR_2
PPR_3
PPR_2
PPR_1
PPR
RNPP_C
TPR_12
TPR_2
PPR_2
PPR
PPR_1
PPR
PPR_2
TPR_19
PPR_3
PPR_1
PPR_2
PPR
PPR
TPR_2
TPR_7

References:

TPR_7

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

Phage_rep_org_N

TPR_14

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

RNPP_C

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_12

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	2.8E-05	13	27.00	65	183
PPR_3	Pentatricopeptide repeat domain	0.22	2	25.00	103	127
PPR	PPR repeat	0.006	7	25.00	104	125
PPR_1	PPR repeat	0.038	4	23.80	113	125
RNPP_C	RNPP family C-terminal domain	0.071	2	26.50	125	153
PPR_3	Pentatricopeptide repeat domain	1.2E-05	15	25.00	130	164
PPR_1	PPR repeat	0.00011	12	23.80	131	159
PPR_2	PPR repeat family	1.8E-09	28	30.00	131	178
PPR	PPR repeat	2.5E-09	27	25.00	133	161
TPR_14	Tetratricopeptide repeat	0.025	6	23.50	134	159
TPR_7	Tetratricopeptide repeat	0.21	2	27.90	140	157
TPR_2	Tetratricopeptide repeat	0.77	0	22.40	141	157
TPR_19	Tetratricopeptide repeat	0.85	0	25.00	144	158
PPR	PPR repeat	0.36	1	25.00	170	194
TPR_12	Tetratricopeptide repeat	0.00073	10	30.10	177	232
Phage_rep_org_N	N-terminal phage replisome organiser (Phage_rep_org_N)	4.3E-05	13	22.00	195	273
PPR_long	Pentacotripeptide-repeat region of PRORP	2.6E-05	13	27.00	198	338
RNPP_C	RNPP family C-terminal domain	0.0022	7	26.50	199	233
PPR_3	Pentatricopeptide repeat domain	0.051	4	25.00	203	233
TPR_19	Tetratricopeptide repeat	0.0027	8	25.00	204	234
PPR	PPR repeat	2.2E-07	21	25.00	208	234
PPR_2	PPR repeat family	2E-05	15	30.00	208	229
PPR_1	PPR repeat	0.00074	9	23.80	208	229
TPR_14	Tetratricopeptide repeat	0.054	4	23.50	210	232
TPR_7	Tetratricopeptide repeat	0.003	8	27.90	212	235
TPR_2	Tetratricopeptide repeat	0.0048	7	22.40	213	233
PPR_3	Pentatricopeptide repeat domain	3.3E-06	17	25.00	230	283
PPR_2	PPR repeat family	1.4E-07	22	30.00	233	285
PPR_1	PPR repeat	5.8E-08	22	23.80	234	262
PPR	PPR repeat	5.3E-10	29	25.00	237	263
RNPP_C	RNPP family C-terminal domain	0.03	3	26.50	239	267
TPR_12	Tetratricopeptide repeat	0.18	2	30.10	240	260
TPR_2	Tetratricopeptide repeat	0.3	1	22.40	245	260
PPR_2	PPR repeat family	0.079	3	30.00	274	303
PPR	PPR repeat	0.00037	11	25.00	277	303
PPR_1	PPR repeat	9.3E-08	22	23.80	308	338
PPR	PPR repeat	1.9E-05	15	25.00	315	338
PPR_2	PPR repeat family	4.9E-05	13	30.00	316	353
TPR_19	Tetratricopeptide repeat	0.79	0	25.00	318	339
PPR_3	Pentatricopeptide repeat domain	0.0029	8	25.00	339	370
PPR_1	PPR repeat	0.04	4	23.80	340	361
PPR_2	PPR repeat family	0.1	3	30.00	342	361
PPR	PPR repeat	0.0039	7	25.00	345	366
PPR	PPR repeat	0.22	2	25.00	381	396
TPR_2	Tetratricopeptide repeat	0.81	0	22.40	381	396
TPR_7	Tetratricopeptide repeat	0.43	1	27.90	381	396