c2pfam

AT1G74410.1 :

Domain Description Evalue Bits GA Start End
Gly-zipper_Omp Glycine zipper 0.085 4 24.90 27 54
DUF1269 Protein of unknown function (DUF1269) 0.0013 10 21.10 27 61
TraT Enterobacterial TraT complement resistance protein 0.0014 9 27.50 30 77
Gly-zipper_YMGG YMGG-like Gly-zipper 0.00022 12 28.90 36 74
Gly-zipper_OmpA Glycine-zipper domain 0.16 2 27.00 39 74
Bacteriocin_IIc Bacteriocin class II with double-glycine leader peptide 0.39 1 27.00 40 74
Gly-zipper_Omp Glycine zipper 0.00033 11 24.90 42 74
Rick_17kDa_Anti Rickettsia 17 kDa surface antigen 4.3E-05 14 33.00 42 75
DUF1269 Protein of unknown function (DUF1269) 0.13 3 21.10 61 75
zf-RING_11 RING-like zinc finger 0.87 0 27.00 153 161
zf-HC5HC2H PHD-like zinc-binding domain 5.1E-05 14 29.10 161 205
zf-rbx1 RING-H2 zinc finger domain 4.3E-11 34 31.00 171 218
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 0.0002 12 27.30 173 215
Prok-RING_1 Prokaryotic RING finger family 1 0.0083 7 29.10 174 206
FANCL_C FANCL C-terminal domain 0.00028 12 20.70 174 210
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 2.2E-07 21 27.00 175 222
zf-RING_5 zinc-RING finger domain 1.1E-06 19 27.90 175 219
zf-RING_2 Ring finger domain 5.8E-15 46 27.30 175 218
zf-RING_11 RING-like zinc finger 1.2E-10 32 27.00 176 204
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.9E-10 31 27.00 176 217
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.9E-08 24 21.00 176 217
zf-RING_UBOX RING-type zinc-finger 4.1E-08 24 25.20 176 215
zf-RING_4 RING/Ubox like zinc-binding domain 0.00024 12 27.00 176 220
Prok-RING_4 Prokaryotic RING finger family 4 2.8E-05 15 27.00 176 221
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 2.7E-07 21 21.40 192 221
Prok-RING_1 Prokaryotic RING finger family 1 0.091 3 29.10 213 222
zf-RING_UBOX RING-type zinc-finger 0.14 3 25.20 214 219
zf-RING_11 RING-like zinc finger 0.71 0 27.00 214 222

223

Gly-zipper_Omp
DUF1269
TraT
Gly-zipper_YMGG
Gly-zipper_OmpA
Bacteriocin_IIc
Gly-zipper_Omp
Rick_17kDa_Anti
DUF1269
zf-RING_11
zf-HC5HC2H
zf-rbx1
Zn_ribbon_17
Prok-RING_1
FANCL_C
zf-C3HC4_3
zf-RING_5
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_4
Prok-RING_4
zf-ANAPC11
Prok-RING_1
zf-RING_UBOX
zf-RING_11

References:

Rick_17kDa_Anti
3139629 Expression of the gene encoding the 17-kilodalton antigen from Rickettsia rickettsii: transcription and posttranslational modification. J Bacteriol 1988;170:4493-4500.

Gly-zipper_YMGG

Gly-zipper_OmpA

Gly-zipper_Omp

Prok-RING_4

zf-HC5HC2H

zf-RING_5

zf-RING_UBOX

Bacteriocin_IIc
17074857 The blp bacteriocins of Streptococcus pneumoniae mediate intraspecies competition both in vitro and in vivo. Infect Immun. 2007;75:443-451.
17298586 Diversity of enterococcal bacteriocins and their grouping in a new classification scheme. FEMS Microbiol Rev. 2007;31:293-310.

zf-ANAPC11

zf-C3HC4_2

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

DUF1269

TraT
9933744 Expression of foreign antigens on the surface of Escherichia coli by fusion to the outer membrane protein traT. J Biomed Sci 1999;6:64-70.
3323526 Surface exclusion genes traS and traT of the F sex factor of Escherichia coli K-12. Determination of the nucleotide sequence and promoter and terminator activities. J Mol Biol 1987;198:1-11.

zf-RING_4

zf-C3HC4_3

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

zf-RING_11

Prok-RING_1

zf-rbx1

zf-RING_2

Zn_ribbon_17

Domain	Description	Evalue	Bits	GA	Start	End
Gly-zipper_Omp	Glycine zipper	0.085	4	24.90	27	54
DUF1269	Protein of unknown function (DUF1269)	0.0013	10	21.10	27	61
TraT	Enterobacterial TraT complement resistance protein	0.0014	9	27.50	30	77
Gly-zipper_YMGG	YMGG-like Gly-zipper	0.00022	12	28.90	36	74
Gly-zipper_OmpA	Glycine-zipper domain	0.16	2	27.00	39	74
Bacteriocin_IIc	Bacteriocin class II with double-glycine leader peptide	0.39	1	27.00	40	74
Gly-zipper_Omp	Glycine zipper	0.00033	11	24.90	42	74
Rick_17kDa_Anti	Rickettsia 17 kDa surface antigen	4.3E-05	14	33.00	42	75
DUF1269	Protein of unknown function (DUF1269)	0.13	3	21.10	61	75
zf-RING_11	RING-like zinc finger	0.87	0	27.00	153	161
zf-HC5HC2H	PHD-like zinc-binding domain	5.1E-05	14	29.10	161	205
zf-rbx1	RING-H2 zinc finger domain	4.3E-11	34	31.00	171	218
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	0.0002	12	27.30	173	215
Prok-RING_1	Prokaryotic RING finger family 1	0.0083	7	29.10	174	206
FANCL_C	FANCL C-terminal domain	0.00028	12	20.70	174	210
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	2.2E-07	21	27.00	175	222
zf-RING_5	zinc-RING finger domain	1.1E-06	19	27.90	175	219
zf-RING_2	Ring finger domain	5.8E-15	46	27.30	175	218
zf-RING_11	RING-like zinc finger	1.2E-10	32	27.00	176	204
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1.9E-10	31	27.00	176	217
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	3.9E-08	24	21.00	176	217
zf-RING_UBOX	RING-type zinc-finger	4.1E-08	24	25.20	176	215
zf-RING_4	RING/Ubox like zinc-binding domain	0.00024	12	27.00	176	220
Prok-RING_4	Prokaryotic RING finger family 4	2.8E-05	15	27.00	176	221
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	2.7E-07	21	21.40	192	221
Prok-RING_1	Prokaryotic RING finger family 1	0.091	3	29.10	213	222
zf-RING_UBOX	RING-type zinc-finger	0.14	3	25.20	214	219
zf-RING_11	RING-like zinc finger	0.71	0	27.00	214	222