c2pfam

AT1G74470.1 :

Domain Description Evalue Bits GA Start End
FAD_binding_3 FAD binding domain 1.4E-08 24 20.10 56 89
Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase 3.2E-09 26 22.80 57 222
DAO FAD dependent oxidoreductase 4.8E-05 13 24.70 57 87
HI0933_like HI0933-like protein 1.5E-06 17 20.30 57 87
Thi4 Thi4 family 3.5E-05 13 20.00 57 89
Pyr_redox Pyridine nucleotide-disulphide oxidoreductase 0.00026 12 22.00 57 87
Trp_halogenase Tryptophan halogenase 0.0061 5 19.60 57 86
3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 0.00021 11 20.90 58 92
FAD_binding_2 FAD binding domain 4.6E-06 16 20.40 58 87
FAD_oxidored FAD dependent oxidoreductase 3.6E-06 16 27.00 58 87
Lycopene_cycl Lycopene cyclase protein 0.00078 9 23.40 58 87
GIDA Glucose inhibited division protein A 1.3E-08 24 20.00 58 92
TrkA_N TrkA-N domain 0.00027 11 21.70 58 92
NAD_binding_8 NAD(P)-binding Rossmann-like domain 4.5E-05 14 21.90 60 87
Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase 0.00022 11 30.00 60 87
FAD_binding_3 FAD binding domain 4E-06 16 20.10 135 223
DAO FAD dependent oxidoreductase 0.0018 8 24.70 143 283
Trp_halogenase Tryptophan halogenase 0.076 2 19.60 144 218
Lycopene_cycl Lycopene cyclase protein 0.0018 7 23.40 292 373
FAD_binding_3 FAD binding domain 0.12 1 20.10 306 346
Trp_halogenase Tryptophan halogenase 0.37 -1 19.60 322 354

467

FAD_binding_3
Pyr_redox_2
DAO
HI0933_like
Thi4
Pyr_redox
Trp_halogenase
3HCDH_N
FAD_binding_2
FAD_oxidored
Lycopene_cycl
GIDA
TrkA_N
NAD_binding_8
Pyr_redox_3
FAD_binding_3
DAO
Trp_halogenase
Lycopene_cycl
FAD_binding_3
Trp_halogenase

References:

TrkA_N
9478130 A novel family of predicted phosphoesterases includes Drosophila prune protein and bacterial RecJ exonuclease. Trends Biochem Sci 1998;23:17-19.
8412700 NAD+ binding to the Escherichia coli K(+)-uptake protein TrkA and sequence similarity between TrkA and domains of a family of dehydrogenases suggest a role for NAD+ in bacterial transport. Mol Microbiol 1993;9:533-543.
11292341 Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains. J Mol Biol 2001;307:1271-1292.

FAD_binding_2
8061609 Structure of glutathione reductase from Escherichia coli at 1.86 A resolution: comparison with the enzyme from human erythrocytes. Protein Sci 1994;3:799-809.

3HCDH_N
3479790 Structure of L-3-hydroxyacyl-coenzyme A dehydrogenase: preliminary chain tracing at 2.8-A resolution. Proc Natl Acad Sci U S A 1987;84:8262-8266.

Lycopene_cycl
8837512 Functional analysis of the beta and epsilon lycopene cyclase enzymes of Arabidopsis reveals a mechanism for control of cyclic carotenoid formation. Plant Cell 1996;8:1613-1626.
11226339 One ring or two? Determination of ring number in carotenoids by lycopene epsilon-cyclases. Proc Natl Acad Sci U S A 2001;98:2905-2910.

Thi4
7961415 Cloning, nucleotide sequence, and regulation of Schizosaccharomyces pombe thi4, a thiamine biosynthetic gene. J Bacteriol 1994;176:6631-6635.

FAD_binding_3
1409567 Crystal structure of the reduced form of p-hydroxybenzoate hydroxylase refined at 2.3A resolution. Proteins 1992;14:178-190.

Pyr_redox_2
8805537 Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase. Structure 1996;4:277-286.

DAO
9153426 Active site plasticity in D-amino acid oxidase: a crystallographic analysis. Biochemistry 1997;36:5853-5860.

Pyr_redox
8805537 Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase. Structure 1996;4:277-286.

HI0933_like

Pyr_redox_3

FAD_oxidored

GIDA

Trp_halogenase
10547442 Conservation of the pyrrolnitrin biosynthetic gene cluster among six pyrrolnitrin-producing strains. FEMS Microbiol Lett 1999;180:39-44.

NAD_binding_8

Domain	Description	Evalue	Bits	GA	Start	End
FAD_binding_3	FAD binding domain	1.4E-08	24	20.10	56	89
Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	3.2E-09	26	22.80	57	222
DAO	FAD dependent oxidoreductase	4.8E-05	13	24.70	57	87
HI0933_like	HI0933-like protein	1.5E-06	17	20.30	57	87
Thi4	Thi4 family	3.5E-05	13	20.00	57	89
Pyr_redox	Pyridine nucleotide-disulphide oxidoreductase	0.00026	12	22.00	57	87
Trp_halogenase	Tryptophan halogenase	0.0061	5	19.60	57	86
3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	0.00021	11	20.90	58	92
FAD_binding_2	FAD binding domain	4.6E-06	16	20.40	58	87
FAD_oxidored	FAD dependent oxidoreductase	3.6E-06	16	27.00	58	87
Lycopene_cycl	Lycopene cyclase protein	0.00078	9	23.40	58	87
GIDA	Glucose inhibited division protein A	1.3E-08	24	20.00	58	92
TrkA_N	TrkA-N domain	0.00027	11	21.70	58	92
NAD_binding_8	NAD(P)-binding Rossmann-like domain	4.5E-05	14	21.90	60	87
Pyr_redox_3	Pyridine nucleotide-disulphide oxidoreductase	0.00022	11	30.00	60	87
FAD_binding_3	FAD binding domain	4E-06	16	20.10	135	223
DAO	FAD dependent oxidoreductase	0.0018	8	24.70	143	283
Trp_halogenase	Tryptophan halogenase	0.076	2	19.60	144	218
Lycopene_cycl	Lycopene cyclase protein	0.0018	7	23.40	292	373
FAD_binding_3	FAD binding domain	0.12	1	20.10	306	346
Trp_halogenase	Tryptophan halogenase	0.37	-1	19.60	322	354