c2pfam

AT1G74630.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 5.3E-05 12 23.80 67 96
PPR_3 Pentatricopeptide repeat domain 0.0043 6 25.00 67 116
PPR_2 PPR repeat family 1.7E-08 24 30.00 68 115
PPR PPR repeat 5.7E-07 19 25.00 71 101
PPR_long Pentacotripeptide-repeat region of PRORP 0.5 -2 27.00 72 138
PPR PPR repeat 5.7E-06 16 25.00 145 168
PPR_2 PPR repeat family 0.0023 7 30.00 145 168
PPR_3 Pentatricopeptide repeat domain 0.003 7 25.00 145 182
PPR_1 PPR repeat 0.014 4 23.80 145 167
PPR_1 PPR repeat 4.1E-06 16 23.80 168 198
PPR_3 Pentatricopeptide repeat domain 9.9E-05 11 25.00 169 198
PPR_2 PPR repeat family 1.5E-07 21 30.00 170 202
PPR PPR repeat 2.2E-07 20 25.00 173 202
TPR_14 Tetratricopeptide repeat 0.01 6 23.50 174 206
PPR_long Pentacotripeptide-repeat region of PRORP 0.00012 10 27.00 177 290
PPR_1 PPR repeat 1.6E-05 14 23.80 201 229
PPR_2 PPR repeat family 3.7E-08 23 30.00 202 232
PPR PPR repeat 2.8E-09 26 25.00 205 231
PPR_3 Pentatricopeptide repeat domain 0.01 5 25.00 205 229
TPR_14 Tetratricopeptide repeat 0.65 0 23.50 210 228
PPR_1 PPR repeat 0.28 0 23.80 233 254
PPR_2 PPR repeat family 1.3E-08 24 30.00 233 279
PPR PPR repeat 4.5E-06 16 25.00 235 264
PPR_3 Pentatricopeptide repeat domain 0.061 3 25.00 257 283
PPR PPR repeat 0.13 2 25.00 270 287
PPR PPR repeat 2.9E-07 20 25.00 308 335
PPR_2 PPR repeat family 4.3E-05 13 30.00 308 335
PPR_3 Pentatricopeptide repeat domain 0.0019 7 25.00 308 335
PPR_1 PPR repeat 0.013 4 23.80 308 330
PPR_2 PPR repeat family 1E-14 44 30.00 335 382
PPR PPR repeat 2.3E-11 32 25.00 337 367
PPR_1 PPR repeat 1.6E-06 17 23.80 337 363
TPR_14 Tetratricopeptide repeat 0.51 1 23.50 346 363
PPR_long Pentacotripeptide-repeat region of PRORP 1.3E-06 17 27.00 353 428
PPR_3 Pentatricopeptide repeat domain 8E-09 25 25.00 357 418
PPR_1 PPR repeat 0.0052 6 23.80 366 398
PPR PPR repeat 1.9E-07 20 25.00 373 399
PPR_2 PPR repeat family 0.00043 10 30.00 374 404
PPR_1 PPR repeat 4.6E-05 12 23.80 403 433
PPR_2 PPR repeat family 0.00083 9 30.00 409 446
PPR PPR repeat 5.7E-06 16 25.00 409 433
PPR_1 PPR repeat 0.11 1 23.80 436 461
PPR_2 PPR repeat family 0.081 2 30.00 437 461
PPR PPR repeat 0.00052 9 25.00 441 461
TPR_14 Tetratricopeptide repeat 0.67 0 23.50 441 474
PPR_3 Pentatricopeptide repeat domain 0.033 3 25.00 442 466
PPR PPR repeat 0.035 4 25.00 481 501
DYW_deaminase DYW family of nucleic acid deaminases 4.5E-37 116 31.60 511 633

643

PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR
PPR_2
PPR_3
PPR_1
PPR_1
PPR_3
PPR_2
PPR
TPR_14
PPR_long
PPR_1
PPR_2
PPR
PPR_3
TPR_14
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_1
TPR_14
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_14
PPR_3
PPR
DYW_deaminase

References:

DYW_deaminase

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	5.3E-05	12	23.80	67	96
PPR_3	Pentatricopeptide repeat domain	0.0043	6	25.00	67	116
PPR_2	PPR repeat family	1.7E-08	24	30.00	68	115
PPR	PPR repeat	5.7E-07	19	25.00	71	101
PPR_long	Pentacotripeptide-repeat region of PRORP	0.5	-2	27.00	72	138
PPR	PPR repeat	5.7E-06	16	25.00	145	168
PPR_2	PPR repeat family	0.0023	7	30.00	145	168
PPR_3	Pentatricopeptide repeat domain	0.003	7	25.00	145	182
PPR_1	PPR repeat	0.014	4	23.80	145	167
PPR_1	PPR repeat	4.1E-06	16	23.80	168	198
PPR_3	Pentatricopeptide repeat domain	9.9E-05	11	25.00	169	198
PPR_2	PPR repeat family	1.5E-07	21	30.00	170	202
PPR	PPR repeat	2.2E-07	20	25.00	173	202
TPR_14	Tetratricopeptide repeat	0.01	6	23.50	174	206
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00012	10	27.00	177	290
PPR_1	PPR repeat	1.6E-05	14	23.80	201	229
PPR_2	PPR repeat family	3.7E-08	23	30.00	202	232
PPR	PPR repeat	2.8E-09	26	25.00	205	231
PPR_3	Pentatricopeptide repeat domain	0.01	5	25.00	205	229
TPR_14	Tetratricopeptide repeat	0.65	0	23.50	210	228
PPR_1	PPR repeat	0.28	0	23.80	233	254
PPR_2	PPR repeat family	1.3E-08	24	30.00	233	279
PPR	PPR repeat	4.5E-06	16	25.00	235	264
PPR_3	Pentatricopeptide repeat domain	0.061	3	25.00	257	283
PPR	PPR repeat	0.13	2	25.00	270	287
PPR	PPR repeat	2.9E-07	20	25.00	308	335
PPR_2	PPR repeat family	4.3E-05	13	30.00	308	335
PPR_3	Pentatricopeptide repeat domain	0.0019	7	25.00	308	335
PPR_1	PPR repeat	0.013	4	23.80	308	330
PPR_2	PPR repeat family	1E-14	44	30.00	335	382
PPR	PPR repeat	2.3E-11	32	25.00	337	367
PPR_1	PPR repeat	1.6E-06	17	23.80	337	363
TPR_14	Tetratricopeptide repeat	0.51	1	23.50	346	363
PPR_long	Pentacotripeptide-repeat region of PRORP	1.3E-06	17	27.00	353	428
PPR_3	Pentatricopeptide repeat domain	8E-09	25	25.00	357	418
PPR_1	PPR repeat	0.0052	6	23.80	366	398
PPR	PPR repeat	1.9E-07	20	25.00	373	399
PPR_2	PPR repeat family	0.00043	10	30.00	374	404
PPR_1	PPR repeat	4.6E-05	12	23.80	403	433
PPR_2	PPR repeat family	0.00083	9	30.00	409	446
PPR	PPR repeat	5.7E-06	16	25.00	409	433
PPR_1	PPR repeat	0.11	1	23.80	436	461
PPR_2	PPR repeat family	0.081	2	30.00	437	461
PPR	PPR repeat	0.00052	9	25.00	441	461
TPR_14	Tetratricopeptide repeat	0.67	0	23.50	441	474
PPR_3	Pentatricopeptide repeat domain	0.033	3	25.00	442	466
PPR	PPR repeat	0.035	4	25.00	481	501
DYW_deaminase	DYW family of nucleic acid deaminases	4.5E-37	116	31.60	511	633