c2pfam

AT1G76870.1 :

Domain Description Evalue Bits GA Start End
PBP1_TM Transmembrane domain of transglycosylase PBP1 at N-terminal 0.0021 7 27.80 27 98
Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain 1.4E-25 78 27.00 85 204
RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain 3.6E-05 13 21.00 122 157
PBP1_TM Transmembrane domain of transglycosylase PBP1 at N-terminal 0.0036 6 27.80 231 258
DUF3287 Protein of unknown function (DUF3287) 9.3E-05 10 25.00 308 360
RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain 0.015 4 21.00 324 368
Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain 0.97 -2 27.00 343 349

385

PBP1_TM
Myb_DNA-bind_4
RNA_pol_Rpb5_N
PBP1_TM
DUF3287
RNA_pol_Rpb5_N
Myb_DNA-bind_4

References:

DUF3287

Myb_DNA-bind_4

PBP1_TM

RNA_pol_Rpb5_N
10841537 Crystal structure of RPB5, a universal eukaryotic RNA polymerase subunit and transcription factor interaction target. Proc Natl Acad Sci U S A 2000;97:6306-6310.
10841538 Solution structure of the RNA polymerase subunit RPB5 from Methanobacterium thermoautotrophicum. Proc Natl Acad Sci U S A 2000;97:6311-6315.
10784442 Architecture of RNA polymerase II and implications for the transcription mechanism. Science 2000;288:640-649.

Domain	Description	Evalue	Bits	GA	Start	End
PBP1_TM	Transmembrane domain of transglycosylase PBP1 at N-terminal	0.0021	7	27.80	27	98
Myb_DNA-bind_4	Myb/SANT-like DNA-binding domain	1.4E-25	78	27.00	85	204
RNA_pol_Rpb5_N	RNA polymerase Rpb5, N-terminal domain	3.6E-05	13	21.00	122	157
PBP1_TM	Transmembrane domain of transglycosylase PBP1 at N-terminal	0.0036	6	27.80	231	258
DUF3287	Protein of unknown function (DUF3287)	9.3E-05	10	25.00	308	360
RNA_pol_Rpb5_N	RNA polymerase Rpb5, N-terminal domain	0.015	4	21.00	324	368
Myb_DNA-bind_4	Myb/SANT-like DNA-binding domain	0.97	-2	27.00	343	349