c2pfam

AT1G78950.1 :

Domain Description Evalue Bits GA Start End
SQHop_cyclase_C Squalene-hopene cyclase C-terminal domain 0.0027 5 26.10 94 119
Pec_lyase Pectic acid lyase 0.14 0 19.80 97 117
SQHop_cyclase_N Squalene-hopene cyclase N-terminal domain 0 133 26.20 105 405
SQHop_cyclase_C Squalene-hopene cyclase C-terminal domain 0.0028 5 26.10 138 180
Prenyltrans Prenyltransferase and squalene oxidase repeat 1.6E-09 26 21.20 148 190
TED_complement A-macroglobulin TED domain 0.93 -3 22.00 403 428
SQHop_cyclase_C Squalene-hopene cyclase C-terminal domain 0 166 26.10 416 753
LANC_like Lanthionine synthetase C-like protein 0.00087 7 21.90 488 535
SQHop_cyclase_N Squalene-hopene cyclase N-terminal domain 0.6 -2 26.20 506 532
TED_complement A-macroglobulin TED domain 0.01 4 22.00 510 605
Prenyltrans Prenyltransferase and squalene oxidase repeat 0.68 -1 21.20 519 531
TED_complement A-macroglobulin TED domain 7.9E-07 17 22.00 570 708
Pec_lyase Pectic acid lyase 0.0028 6 19.80 570 611
LANC_like Lanthionine synthetase C-like protein 0.015 3 21.90 572 620
Prenyltrans Prenyltransferase and squalene oxidase repeat 5.8E-15 44 21.20 592 632
SQHop_cyclase_N Squalene-hopene cyclase N-terminal domain 3E-05 12 26.20 592 672
Pec_lyase Pectic acid lyase 1.9E-06 16 19.80 636 674
Prenyltrans Prenyltransferase and squalene oxidase repeat 1.6E-09 26 21.20 641 690
SQHop_cyclase_N Squalene-hopene cyclase N-terminal domain 0.4 -2 26.20 696 724

759

SQHop_cyclase_C
Pec_lyase
SQHop_cyclase_N
SQHop_cyclase_C
Prenyltrans
TED_complement
SQHop_cyclase_C
LANC_like
SQHop_cyclase_N
TED_complement
Prenyltrans
TED_complement
Pec_lyase
LANC_like
Prenyltrans
SQHop_cyclase_N
Pec_lyase
Prenyltrans
SQHop_cyclase_N

References:

Prenyltrans
9295270 Structure and function of a squalene cyclase. Science 1997;277:1811-1815.
8016864 A specific amino acid repeat in squalene and oxidosqualene cyclases. Trends Biochem Sci 1994;19:157-158.

LANC_like
11376939 Characterization of rat LANCL1, a novel member of the lanthionine synthetase C-like protein family, highly expressed in testis and brain. Gene 2001;269:73-80.
12127987 Heterologous expression and purification of SpaB involved in subtilin biosynthesis. Biochem Biophys Res Commun 2002;295:952-957.

TED_complement

SQHop_cyclase_N

SQHop_cyclase_C

Pec_lyase

Domain	Description	Evalue	Bits	GA	Start	End
SQHop_cyclase_C	Squalene-hopene cyclase C-terminal domain	0.0027	5	26.10	94	119
Pec_lyase	Pectic acid lyase	0.14	0	19.80	97	117
SQHop_cyclase_N	Squalene-hopene cyclase N-terminal domain	0	133	26.20	105	405
SQHop_cyclase_C	Squalene-hopene cyclase C-terminal domain	0.0028	5	26.10	138	180
Prenyltrans	Prenyltransferase and squalene oxidase repeat	1.6E-09	26	21.20	148	190
TED_complement	A-macroglobulin TED domain	0.93	-3	22.00	403	428
SQHop_cyclase_C	Squalene-hopene cyclase C-terminal domain	0	166	26.10	416	753
LANC_like	Lanthionine synthetase C-like protein	0.00087	7	21.90	488	535
SQHop_cyclase_N	Squalene-hopene cyclase N-terminal domain	0.6	-2	26.20	506	532
TED_complement	A-macroglobulin TED domain	0.01	4	22.00	510	605
Prenyltrans	Prenyltransferase and squalene oxidase repeat	0.68	-1	21.20	519	531
TED_complement	A-macroglobulin TED domain	7.9E-07	17	22.00	570	708
Pec_lyase	Pectic acid lyase	0.0028	6	19.80	570	611
LANC_like	Lanthionine synthetase C-like protein	0.015	3	21.90	572	620
Prenyltrans	Prenyltransferase and squalene oxidase repeat	5.8E-15	44	21.20	592	632
SQHop_cyclase_N	Squalene-hopene cyclase N-terminal domain	3E-05	12	26.20	592	672
Pec_lyase	Pectic acid lyase	1.9E-06	16	19.80	636	674
Prenyltrans	Prenyltransferase and squalene oxidase repeat	1.6E-09	26	21.20	641	690
SQHop_cyclase_N	Squalene-hopene cyclase N-terminal domain	0.4	-2	26.20	696	724