c2pfam

AT1G79560.1 :

Domain Description Evalue Bits GA Start End
TIP49 TIP49 C-terminus 0.57 0 23.80 465 497
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00026 11 26.60 523 552
TIP49 TIP49 C-terminus 2E-06 18 23.80 527 573
AAA_16 AAA ATPase domain 4.8E-06 17 32.60 527 564
RuvB_N Holliday junction DNA helicase ruvB N-terminus 3.5E-06 17 20.00 528 594
AAA_5 AAA domain (dynein-related subfamily) 2.5E-05 15 20.80 528 560
ATPase KaiC 6.1E-05 13 26.60 528 620
AAA_18 AAA domain 4.2E-05 15 29.40 529 555
AAA_28 AAA domain 5E-05 14 27.00 529 568
Sigma54_activ_2 Sigma-54 interaction domain 0.00022 12 25.00 529 561
AAA_14 AAA domain 0.00026 12 27.00 529 596
AAA_33 AAA domain 1.7E-05 16 27.00 529 555
AAA ATPase family associated with various cellular activities (AAA) 1.2E-34 110 20.80 529 665
AAA_2 AAA domain (Cdc48 subfamily) 5.7E-07 20 20.60 529 644
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0003 11 20.30 529 547
AAA_24 AAA domain 0.00036 11 27.00 529 550
RNA_helicase RNA helicase 0.00049 11 21.50 529 549
AAA_22 AAA domain 0.00025 12 27.00 530 550
AAA_17 AAA domain 0.00037 11 27.00 533 576
AAA_lid_3 AAA+ lid domain 5.2E-14 42 27.20 688 730
Peptidase_M41 Peptidase family M41 3.3E-28 89 20.60 758 959

1008

TIP49
TsaE
TIP49
AAA_16
RuvB_N
AAA_5
ATPase
AAA_18
AAA_28
Sigma54_activ_2
AAA_14
AAA_33
AAA
AAA_2
Mg_chelatase
AAA_24
RNA_helicase
AAA_22
AAA_17
AAA_lid_3
Peptidase_M41

References:

AAA_17

AAA_16

AAA_14

TsaE

AAA_lid_3

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

Peptidase_M41

AAA_24

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_33

ATPase

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_28

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

Sigma54_activ_2

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
TIP49	TIP49 C-terminus	0.57	0	23.80	465	497
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00026	11	26.60	523	552
TIP49	TIP49 C-terminus	2E-06	18	23.80	527	573
AAA_16	AAA ATPase domain	4.8E-06	17	32.60	527	564
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	3.5E-06	17	20.00	528	594
AAA_5	AAA domain (dynein-related subfamily)	2.5E-05	15	20.80	528	560
ATPase	KaiC	6.1E-05	13	26.60	528	620
AAA_18	AAA domain	4.2E-05	15	29.40	529	555
AAA_28	AAA domain	5E-05	14	27.00	529	568
Sigma54_activ_2	Sigma-54 interaction domain	0.00022	12	25.00	529	561
AAA_14	AAA domain	0.00026	12	27.00	529	596
AAA_33	AAA domain	1.7E-05	16	27.00	529	555
AAA	ATPase family associated with various cellular activities (AAA)	1.2E-34	110	20.80	529	665
AAA_2	AAA domain (Cdc48 subfamily)	5.7E-07	20	20.60	529	644
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0003	11	20.30	529	547
AAA_24	AAA domain	0.00036	11	27.00	529	550
RNA_helicase	RNA helicase	0.00049	11	21.50	529	549
AAA_22	AAA domain	0.00025	12	27.00	530	550
AAA_17	AAA domain	0.00037	11	27.00	533	576
AAA_lid_3	AAA+ lid domain	5.2E-14	42	27.20	688	730
Peptidase_M41	Peptidase family M41	3.3E-28	89	20.60	758	959