c2pfam

AT1G79830.1 :

Domain Description Evalue Bits GA Start End
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.53 -2 27.90 91 158
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 9.7E-05 10 28.70 338 410
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.028 3 27.90 341 397
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 0.083 1 35.00 348 382
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 0.086 1 35.00 364 417
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 1.6E-06 16 27.90 405 475
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 0.54 -2 28.70 407 460
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 6.7E-18 52 35.00 433 504
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 0.68 -2 35.00 514 530
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 0.034 2 35.00 550 581
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 0.42 -2 28.70 607 678
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 0.056 1 35.00 639 687
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.13 0 27.90 648 680
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 0.014 3 28.70 671 748
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.25 -1 27.90 673 745
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 0.027 2 35.00 684 745
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 1.4E-32 100 28.70 851 951
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 0.32 -1 35.00 857 885
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.061 1 27.90 880 935
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 0.099 1 35.00 918 941

956

Seryl_tRNA_N
TMF_TATA_bd
Seryl_tRNA_N
TMF_DNA_bd
TMF_DNA_bd
Seryl_tRNA_N
TMF_TATA_bd
TMF_DNA_bd
TMF_DNA_bd
TMF_DNA_bd
TMF_TATA_bd
TMF_DNA_bd
Seryl_tRNA_N
TMF_TATA_bd
Seryl_tRNA_N
TMF_DNA_bd
TMF_TATA_bd
TMF_DNA_bd
Seryl_tRNA_N
TMF_DNA_bd

References:

TMF_TATA_bd
1409643 Cloning and chromosomal mapping of a human immunodeficiency virus 1 "TATA" element modulatory factor. Proc Natl Acad Sci U S A. 1992;89:9372-9376.
15128430 TMF is a golgin that binds Rab6 and influences Golgi morphology. BMC Cell Biol. 2004;5:18.
18182439 Localization and domain characterization of Arabidopsis golgin candidates. J Exp Bot. 2007;58:4373-4386.

Seryl_tRNA_N
8654381 The crystal structure of the ternary complex of T.thermophilus seryl-tRNA synthetase with tRNA(Ser) and a seryl-adenylate analogue reveals a conformational switch in the active site. EMBO J 1996;15:2834-2842.

TMF_DNA_bd
9742951 Tyrosine phosphorylation of the TATA element modulatory factor by the FER nuclear tyrosine kinases. FEBS Lett. 1998;434:339-345.
1409643 Cloning and chromosomal mapping of a human immunodeficiency virus 1 "TATA" element modulatory factor. Proc Natl Acad Sci U S A. 1992;89:9372-9376.
15128430 TMF is a golgin that binds Rab6 and influences Golgi morphology. BMC Cell Biol. 2004;5:18.
18182439 Localization and domain characterization of Arabidopsis golgin candidates. J Exp Bot. 2007;58:4373-4386.

Domain	Description	Evalue	Bits	GA	Start	End
Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	0.53	-2	27.90	91	158
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	9.7E-05	10	28.70	338	410
Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	0.028	3	27.90	341	397
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	0.083	1	35.00	348	382
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	0.086	1	35.00	364	417
Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	1.6E-06	16	27.90	405	475
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	0.54	-2	28.70	407	460
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	6.7E-18	52	35.00	433	504
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	0.68	-2	35.00	514	530
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	0.034	2	35.00	550	581
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	0.42	-2	28.70	607	678
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	0.056	1	35.00	639	687
Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	0.13	0	27.90	648	680
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	0.014	3	28.70	671	748
Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	0.25	-1	27.90	673	745
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	0.027	2	35.00	684	745
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	1.4E-32	100	28.70	851	951
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	0.32	-1	35.00	857	885
Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	0.061	1	27.90	880	935
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	0.099	1	35.00	918	941