c2pfam

AT1G79990.1 :

Domain Description Evalue Bits GA Start End
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.063 3 22.90 14 58
WD40 WD domain, G-beta repeat 0.00047 10 21.00 18 43
Coatomer_WDAD Coatomer WD associated region 0.62 -2 25.10 31 73
Nup160 Nucleoporin Nup120/160 0.056 1 19.20 35 61
WD40_like WD40-like domain 0.14 0 40.00 38 87
WD40 WD domain, G-beta repeat 0.0031 8 21.00 60 85
WD40 WD domain, G-beta repeat 3.9E-09 26 21.00 91 127
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.57 0 22.90 126 192
WD40 WD domain, G-beta repeat 9.1E-08 22 21.00 134 171
Nup160 Nucleoporin Nup120/160 0.0096 3 19.20 151 172
WD40 WD domain, G-beta repeat 1.9E-09 27 21.00 177 215
Nup160 Nucleoporin Nup120/160 2.6E-05 12 19.20 193 226
WD40_like WD40-like domain 3.8E-06 15 40.00 200 491
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.00068 9 22.90 212 270
WD40 WD domain, G-beta repeat 5.2E-12 35 21.00 220 256
Nup160 Nucleoporin Nup120/160 0.59 -3 19.20 244 262
Coatomer_WDAD Coatomer WD associated region 0 550 25.10 319 762
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.19 1 22.90 356 379
WD40 WD domain, G-beta repeat 0.039 4 21.00 357 373
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.086 2 22.90 462 482
WD40 WD domain, G-beta repeat 0.56 0 21.00 466 487
WD40_like WD40-like domain 0.33 -1 40.00 499 539
TPR_2 Tetratricopeptide repeat 0.0003 10 22.40 670 696
TPR_8 Tetratricopeptide repeat 0.00029 10 25.70 672 697
TPR_8 Tetratricopeptide repeat 0.59 0 25.70 699 714

920

ANAPC4_WD40
WD40
Coatomer_WDAD
Nup160
WD40_like
WD40
WD40
ANAPC4_WD40
WD40
Nup160
WD40
Nup160
WD40_like
ANAPC4_WD40
WD40
Nup160
Coatomer_WDAD
ANAPC4_WD40
WD40
ANAPC4_WD40
WD40
WD40_like
TPR_2
TPR_8
TPR_8

References:

ANAPC4_WD40

Nup160
8557736 Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport. J Cell Biol. 1995;131:1659-1675.
11684705 Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. J Cell Biol 2001;155:339-354.
17360435 Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc Natl Acad Sci U S A. 2007;104:3811-3816.

WD40_like

Coatomer_WDAD

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.063	3	22.90	14	58
WD40	WD domain, G-beta repeat	0.00047	10	21.00	18	43
Coatomer_WDAD	Coatomer WD associated region	0.62	-2	25.10	31	73
Nup160	Nucleoporin Nup120/160	0.056	1	19.20	35	61
WD40_like	WD40-like domain	0.14	0	40.00	38	87
WD40	WD domain, G-beta repeat	0.0031	8	21.00	60	85
WD40	WD domain, G-beta repeat	3.9E-09	26	21.00	91	127
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.57	0	22.90	126	192
WD40	WD domain, G-beta repeat	9.1E-08	22	21.00	134	171
Nup160	Nucleoporin Nup120/160	0.0096	3	19.20	151	172
WD40	WD domain, G-beta repeat	1.9E-09	27	21.00	177	215
Nup160	Nucleoporin Nup120/160	2.6E-05	12	19.20	193	226
WD40_like	WD40-like domain	3.8E-06	15	40.00	200	491
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.00068	9	22.90	212	270
WD40	WD domain, G-beta repeat	5.2E-12	35	21.00	220	256
Nup160	Nucleoporin Nup120/160	0.59	-3	19.20	244	262
Coatomer_WDAD	Coatomer WD associated region	0	550	25.10	319	762
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.19	1	22.90	356	379
WD40	WD domain, G-beta repeat	0.039	4	21.00	357	373
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.086	2	22.90	462	482
WD40	WD domain, G-beta repeat	0.56	0	21.00	466	487
WD40_like	WD40-like domain	0.33	-1	40.00	499	539
TPR_2	Tetratricopeptide repeat	0.0003	10	22.40	670	696
TPR_8	Tetratricopeptide repeat	0.00029	10	25.70	672	697
TPR_8	Tetratricopeptide repeat	0.59	0	25.70	699	714